Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_J10
(643 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X07278-1|CAA30259.1| 622|Drosophila melanogaster protein ( Dros... 30 2.3
BT001506-1|AAN71261.1| 622|Drosophila melanogaster LD38055p pro... 30 2.3
AE014134-935|AAF52262.1| 622|Drosophila melanogaster CG6944-PA ... 30 2.3
AE014297-1476|AAF54775.1| 588|Drosophila melanogaster CG4066-PA... 29 4.1
AE014134-2072|AAZ66459.1| 690|Drosophila melanogaster CG4970-PB... 29 4.1
AY118451-1|AAM49820.1| 440|Drosophila melanogaster AT01479p pro... 28 9.4
AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA... 28 9.4
>X07278-1|CAA30259.1| 622|Drosophila melanogaster protein (
Drosophila mRNA fornuclear lamin Dm0. ).
Length = 622
Score = 30.3 bits (65), Expect = 2.3
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = -1
Query: 478 KCTNLE-NIK--NTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKI 308
+CT E N++ ++ EL N ++ + + E ++ LE K+ E+ N +
Sbjct: 149 ECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNE-ALKELERLRKQFEETRKN-L 206
Query: 307 DQNSQRIVELKNTVVR-----SKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLIYE 143
+Q + V+L+NT+ S K +H+Q + K+ Y+EI LS + ++ + +
Sbjct: 207 EQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQ 266
Query: 142 EL 137
L
Sbjct: 267 SL 268
>BT001506-1|AAN71261.1| 622|Drosophila melanogaster LD38055p
protein.
Length = 622
Score = 30.3 bits (65), Expect = 2.3
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = -1
Query: 478 KCTNLE-NIK--NTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKI 308
+CT E N++ ++ EL N ++ + + E ++ LE K+ E+ N +
Sbjct: 149 ECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNE-ALKELERLRKQFEETRKN-L 206
Query: 307 DQNSQRIVELKNTVVR-----SKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLIYE 143
+Q + V+L+NT+ S K +H+Q + K+ Y+EI LS + ++ + +
Sbjct: 207 EQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQ 266
Query: 142 EL 137
L
Sbjct: 267 SL 268
>AE014134-935|AAF52262.1| 622|Drosophila melanogaster CG6944-PA
protein.
Length = 622
Score = 30.3 bits (65), Expect = 2.3
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Frame = -1
Query: 478 KCTNLE-NIK--NTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKI 308
+CT E N++ ++ EL N ++ + + E ++ LE K+ E+ N +
Sbjct: 149 ECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNE-ALKELERLRKQFEETRKN-L 206
Query: 307 DQNSQRIVELKNTVVR-----SKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLIYE 143
+Q + V+L+NT+ S K +H+Q + K+ Y+EI LS + ++ + +
Sbjct: 207 EQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQ 266
Query: 142 EL 137
L
Sbjct: 267 SL 268
>AE014297-1476|AAF54775.1| 588|Drosophila melanogaster CG4066-PA
protein.
Length = 588
Score = 29.5 bits (63), Expect = 4.1
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -1
Query: 397 DPNLPSIGEYSIAYLEARMKRMEDIL--LNKIDQNSQRIVELKNT-VVRSKKKSVHTQTA 227
D L + + + Y+E ++ +ED LNK NS ++ELKN VR+ K+ + +
Sbjct: 423 DDRLNFVNQLLLGYIEPKVNSLEDSFDNLNKSQINS--LIELKNVPEVRNLTKTSIRKLS 480
Query: 226 HTDETYKKFLYNEISKYLSPDS 161
D F + ++Y S ++
Sbjct: 481 FLDNQLALFNQTQENRYYSVEA 502
>AE014134-2072|AAZ66459.1| 690|Drosophila melanogaster CG4970-PB
protein.
Length = 690
Score = 29.5 bits (63), Expect = 4.1
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = -1
Query: 460 NIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNSQRIVE 281
++ K + ++ + TSSL+ P SIG+ +YL+ ++++ DI +N S+ + +
Sbjct: 305 HVATFKDITSESRSSTSSLNSIPTTFSIGQMVQSYLDGLIEKVVDIFVNTDYLRSKNLDK 364
Query: 280 LKNTVVRSKKKSVHTQTAHTDETY-KKFLYNEISKY----LSPDSNSLIYE 143
K K+ H +H + K+ + + ++ ++P S S I E
Sbjct: 365 SKLMNRLFKEVEDHHWVSHDNNLLTKRLTEHHLRRFKYSLVTPSSRSYINE 415
>AY118451-1|AAM49820.1| 440|Drosophila melanogaster AT01479p
protein.
Length = 440
Score = 28.3 bits (60), Expect = 9.4
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -1
Query: 475 CTNLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNS 296
C N ++ K+ ++ + TSS + P + + E + KR ED ++NK ++N
Sbjct: 230 CPNPKSSKSEISIKSDEKDGTSSKKEFPKDEEVSKCLQLENEIQQKRGEDSVMNKENENL 289
Query: 295 QRIVELKNTVVRSKKKSVHTQTAHTDETYKK 203
V LK +++++++ E KK
Sbjct: 290 CHNVALKCLHLKNERQAQSEAMMKQTEKLKK 320
>AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA
protein.
Length = 1010
Score = 28.3 bits (60), Expect = 9.4
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -1
Query: 475 CTNLENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNS 296
C N ++ K+ ++ + TSS + P + + E + KR ED ++NK ++N
Sbjct: 611 CPNPKSSKSEISIKSDEKDGTSSKKEFPKDEEVSKCLQLENEIQQKRGEDSVMNKENENL 670
Query: 295 QRIVELKNTVVRSKKKSVHTQTAHTDETYKK 203
V LK +++++++ E KK
Sbjct: 671 CHNVALKCLHLKNERQAQSEAMMKQTEKLKK 701
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,203,932
Number of Sequences: 53049
Number of extensions: 381573
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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