Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_J10
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.13
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.13
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.13
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z80216-4|CAB02281.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.93
DQ907010-1|ABI83734.1| 405|Caenorhabditis elegans EAK-6B isofor... 31 0.93
DQ907009-1|ABI83733.1| 388|Caenorhabditis elegans EAK-6A isofor... 31 0.93
Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 28 4.9
AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical ... 28 4.9
Z82275-1|CAB05237.2| 472|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 27 8.6
U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical p... 27 8.6
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 27 8.6
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = -1
Query: 376 GEYSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFL 197
G + IA LE ++ LLNKI++ EL++T+ R KKK+ T HT K+
Sbjct: 1655 GGFDIANLEGTLQS----LLNKIEKLEMERNELRDTLARMKKKTTET---HTTINQKETR 1707
Query: 196 YNEISKYL 173
Y I L
Sbjct: 1708 YRNIEDNL 1715
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = -1
Query: 376 GEYSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFL 197
G + IA LE ++ LLNKI++ EL++T+ R KKK+ T HT K+
Sbjct: 1728 GGFDIANLEGTLQS----LLNKIEKLEMERNELRDTLARMKKKTTET---HTTINQKETR 1780
Query: 196 YNEISKYL 173
Y I L
Sbjct: 1781 YRNIEDNL 1788
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = -1
Query: 376 GEYSIAYLEARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFL 197
G + IA LE ++ LLNKI++ EL++T+ R KKK+ T HT K+
Sbjct: 1728 GGFDIANLEGTLQS----LLNKIEKLEMERNELRDTLARMKKKTTET---HTTINQKETR 1780
Query: 196 YNEISKYL 173
Y I L
Sbjct: 1781 YRNIEDNL 1788
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical protein
W03A3.2 protein.
Length = 1540
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = -1
Query: 466 LENIKNTKIMELKNSNVTSSLSKDPNLPSIGEYSIAYLEARMKRMEDILLNKIDQNSQRI 287
LE +N ME +VT D + E + E +++ E + +ID++ + I
Sbjct: 736 LEEKENIVKMEEMTKSVTEMSLTDNTISFKSEDDLFKKEIKVEEDEVFIKKEIDEDEEEI 795
Query: 286 VELKNTVVRSKKKSVHTQTAHTDETYKKFL---YNEISKYLSPDSNSLI 149
VE TV+ + S+ A TDE + + L ++ I + S +NSL+
Sbjct: 796 VE--ETVIECLETSLLKLKASTDEVFLRRLSQTFSPIGRSRSILNNSLL 842
>Z80216-4|CAB02281.1| 395|Caenorhabditis elegans Hypothetical
protein F10G8.4 protein.
Length = 395
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = -1
Query: 328 DILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLI 149
DIL+N ID + ++ +++ + K H+ A T++ + F+Y+ I KY+ N L
Sbjct: 269 DILINLIDNRIKNSYSIEWWMLKVRSKRNHS--ALTNQQHS-FIYDIIIKYIRTRHNQLR 325
Query: 148 YEELFISKYA 119
+ E ++ +A
Sbjct: 326 HLEKYLEAHA 335
>DQ907010-1|ABI83734.1| 405|Caenorhabditis elegans EAK-6B isoform
protein.
Length = 405
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = -1
Query: 328 DILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLI 149
DIL+N ID + ++ +++ + K H+ A T++ + F+Y+ I KY+ N L
Sbjct: 262 DILINLIDNRIKNSYSIEWWMLKVRSKRNHS--ALTNQQHS-FIYDIIIKYIRTRHNQLR 318
Query: 148 YEELFISKYA 119
+ E ++ +A
Sbjct: 319 HLEKYLEAHA 328
>DQ907009-1|ABI83733.1| 388|Caenorhabditis elegans EAK-6A isoform
protein.
Length = 388
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = -1
Query: 328 DILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDSNSLI 149
DIL+N ID + ++ +++ + K H+ A T++ + F+Y+ I KY+ N L
Sbjct: 262 DILINLIDNRIKNSYSIEWWMLKVRSKRNHS--ALTNQQHS-FIYDIIIKYIRTRHNQLR 318
Query: 148 YEELFISKYA 119
+ E ++ +A
Sbjct: 319 HLEKYLEAHA 328
>Z49071-6|CAA88876.2| 292|Caenorhabditis elegans Hypothetical
protein T22C8.4 protein.
Length = 292
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 352 EARMKRMEDILLNKIDQNSQRIVELKNTVVRSKKKS 245
EA+++RMED + K+++ + LK KKKS
Sbjct: 100 EAKIQRMEDAMKKKLEKEQKEKARLKKREETLKKKS 135
>Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical
protein ZC15.1 protein.
Length = 875
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 478 KCTNLENIKNTKIMELKNSNVTSSLSKDPNLPS 380
+C L K+ ++ LKN+ + KDP+LPS
Sbjct: 96 RCPELGKCKDLEVYFLKNARAQNVPRKDPSLPS 128
>AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical
protein F41G4.5 protein.
Length = 491
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 478 KCTNLENIKNTKIMELKNSNVTSSLSKDPNLPS 380
+C L K+ ++ LKN+ + KDP+LPS
Sbjct: 100 RCPELGKCKDLEVYFLKNARAQNVPRKDPSLPS 132
>Z82275-1|CAB05237.2| 472|Caenorhabditis elegans Hypothetical
protein K01G12.3 protein.
Length = 472
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -1
Query: 325 ILLNKIDQNSQRIVELKNTVVRSKKKSVH----TQTAHTDETYKKFLYNEISK 179
I+ +++DQN QRI+ +N K + T+ +T E+ ++FLYN I K
Sbjct: 286 IMQSRVDQNFQRILAPENDSWSRDKLQIFRLLLTEEQNTIES-RRFLYNSILK 337
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
protein F36D3.5 protein.
Length = 1152
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 319 LNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTD 218
L+K+D N+ + +KN ++R KK H + D
Sbjct: 423 LSKLDVNTSNAITVKNMLIRDFKKLTHHSYSFID 456
>U64845-12|AAC48025.1| 475|Caenorhabditis elegans Hypothetical
protein F45F2.1 protein.
Length = 475
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 427 FSIPLFSCFLYSPDWYICLPSYCL*FYYHYLDYLSMTLSH 546
+SI LF F S +IC+ CL +H + +++SH
Sbjct: 20 WSIELFLAFAQSVRPWICILRTCLYIIFHVTQVVFVSISH 59
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 307 DQNSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYN 191
DQNS++I +LKN + V T + T + +N
Sbjct: 249 DQNSRKIEDLKNEITLKMNDRVMTHVLRPESTDINYFFN 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,552
Number of Sequences: 27780
Number of extensions: 226032
Number of successful extensions: 639
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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