Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J07
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BRZ2 Cluster: Chromosome undetermined scaffold_124, w...    34   2.7  
UniRef50_UPI00015B4782 Cluster: PREDICTED: similar to Lian-Aa1 r...    34   3.6  

>UniRef50_A0BRZ2 Cluster: Chromosome undetermined scaffold_124,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_124,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 496

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 16/69 (23%), Positives = 37/69 (53%)
 Frame = -2

Query: 374 LVLRLEPLTLKFI*EAHEVKVLKFNLQEQEQRSITKHFVVLMVL*YYRFYTVDNAEFLVA 195
           L+L+ +P  ++++       VL F  +  E ++  KH +   ++  Y+F  ++  EF+  
Sbjct: 87  LILKFQPRLIRWVLIIINYGVLSFYYEPDEGKTQYKHQLSSALIVSYQFIVMNTGEFIDT 146

Query: 194 *IKIFTFYS 168
            +++ +FYS
Sbjct: 147 LVQVISFYS 155


>UniRef50_UPI00015B4782 Cluster: PREDICTED: similar to Lian-Aa1
           retrotransposon protein; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to Lian-Aa1 retrotransposon protein -
           Nasonia vitripennis
          Length = 832

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 282 LFLFLEIKFKDFNLVSFLYEL*SERLKPQN 371
           L LFLE  F DF LV  L+ + S+R +PQN
Sbjct: 229 LHLFLEANFPDFQLVKELWPIPSQRNRPQN 258


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,658,824
Number of Sequences: 1657284
Number of extensions: 8037603
Number of successful extensions: 12140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12132
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)