Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J06
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   111   7e-27
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  111 bits (267), Expect = 7e-27
 Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 8/210 (3%)
 Frame = -2

Query: 774 GGVLITDRHVXTAAHCTRRWDADELYVRLGEYDLQRXNDSRSYNFKVVEK-IQHPNFELS 598
           G  +I+ R+V TAAHC    +  +L + +GE+D     ++ +     + K I HP +++ 
Sbjct: 189 GATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDII 248

Query: 597 SYH----NDIAILKLHRPAVFNTYVWPICLPPAD-LD-LTNEIATVIGWGTQWYGGPHSN 436
                  NDIA+LK  +   F   V P CLP    LD       TV+GWG   + G  S+
Sbjct: 249 EKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSH 308

Query: 435 VLMEVSVPVWDHQKCVDAFVDSVFTETVCAGGLEGGKDACQGDSGGPLMYQ-MSSGRWAV 259
           +L + ++ +    +C   +  ++    +CA     GKDACQ DSGGP+++Q   + R   
Sbjct: 309 ILQKTTLNMLTQVECYK-YYGNIMVNAMCA--YAKGKDACQMDSGGPVLWQNPRTKRLVN 365

Query: 258 VGVVSWGLRCGEPNHPGLYARVDKYLDWIL 169
           +G++SWG  CG+  +P    +V  Y+DWI+
Sbjct: 366 IGIISWGAECGK--YPNGNTKVGSYIDWIV 393


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 376 DERIYAFLVIPNRYR 420
           +ER   F+ IPNRYR
Sbjct: 771 EERGILFMPIPNRYR 785


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 315 QGDSGGPLMYQMSSGRWAVVGV 250
           Q ++GG +   +++G W ++GV
Sbjct: 181 QDEAGGDISSFITNGEWDLLGV 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,021
Number of Sequences: 438
Number of extensions: 4546
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)