Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J02
         (429 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22MN8 Cluster: Putative uncharacterized protein; n=1; ...    34   1.4  
UniRef50_UPI000049A37C Cluster: hypothetical membrane-spanning p...    32   5.8  
UniRef50_Q7RFL5 Cluster: R27-2 protein; n=9; Plasmodium (Vinckei...    32   5.8  

>UniRef50_Q22MN8 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1591

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
 Frame = +1

Query: 28   FIELFPICFLKSLMWIFYTFSKLNTRFX*YFHIDQXXXXXXXXXXXXNSKKSCTLLHMFY 207
            F  LFP+C L +L    Y F KL +      ++DQ              K+SC       
Sbjct: 1178 FTFLFPVCLLWALFIPIYFFFKLKSNRE---YLDQIRMKFQFGFIYQEYKRSCYYWEFVK 1234

Query: 208  IFIKLLHLHKFLM-YLMYEIKFL--QTMHTIRNDLIHMLQTNFTKL 336
            IF+K   +   ++ Y    IK +   T+    N LI+++Q   +K+
Sbjct: 1235 IFLKFTIISTLMIFYEQQTIKIILVATLVLAYNQLIYIIQPFVSKV 1280


>UniRef50_UPI000049A37C Cluster: hypothetical membrane-spanning
           protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           hypothetical membrane-spanning protein - Entamoeba
           histolytica HM-1:IMSS
          Length = 469

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 325 SLFVTCELSHSVLCALFEEILFHTLNTLKTY-EGVIVL*KCKTCVIMCRTFYYYRILKRG 149
           SL +  +  H+ L  + EEIL H +    T+  G+     C  C+I+   +Y+   L   
Sbjct: 238 SLIILAQFLHA-LQTILEEILLHDIKAPVTFIVGLRGFYGCLCCIIVLTLYYFMPFLPAS 296

Query: 148 LLSNKIDQY 122
           +  N +D +
Sbjct: 297 IRENIVDTF 305


>UniRef50_Q7RFL5 Cluster: R27-2 protein; n=9; Plasmodium
           (Vinckeia)|Rep: R27-2 protein - Plasmodium yoelii yoelii
          Length = 1986

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 264 KISSNNAHNTE*LNSHVTNKLYEATNSPSQIDLQNRHCIQLLLN 395
           K++S      E  NS V NK+ E  N+  +I+ +N HCI  +++
Sbjct: 163 KLNSRQPDENE-KNSQVENKMNEIKNNDMEINAENIHCISKIIS 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,574,083
Number of Sequences: 1657284
Number of extensions: 6211334
Number of successful extensions: 12642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12622
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)