Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J02
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   2.9  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    25   5.0  
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       24   8.7  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    24   8.7  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 232 HKFLMYLMYEIKFLQTMHTIRNDLIHMLQTNFTKLR 339
           H FL+ L  EIK L ++  +   +  +  T+ TK+R
Sbjct: 522 HTFLLGLSKEIKILISLRLLIERISEVFSTDLTKVR 557


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 414 YPRKY*DLTKVECSADF 364
           YP KY  LTK EC  D+
Sbjct: 144 YPDKYSLLTKTECKLDY 160


>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 265 KFLQTMHTIRNDLIHMLQTNFTKLRILHHK*IFKI 369
           + +QT   +   ++  LQTN  KL+  H K + +I
Sbjct: 87  ELIQTSCHLLTSVLTQLQTNLDKLKDSHQKALLRI 121


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 247 YLMYEIKFLQTMHTIRNDLIHMLQTNFTKL 336
           Y + +  FLQT+ T     +H++Q+N  +L
Sbjct: 196 YGIQDFNFLQTLGTGSFGRVHLVQSNHNRL 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,276
Number of Sequences: 5004
Number of extensions: 30675
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)