Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J02
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0581 - 4307182-4307358,4307387-4307461,4307559-4307621,430...    28   3.7  
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481...    27   6.4  
09_03_0171 - 13062794-13064017                                         27   8.5  

>02_01_0581 -
           4307182-4307358,4307387-4307461,4307559-4307621,
           4307715-4307819,4307917-4308024,4308123-4308260,
           4308357-4308446,4308533-4308658,4308728-4308781,
           4308865-4308936,4309060-4309167,4309272-4309343,
           4309456-4309518,4309747-4309908
          Length = 470

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 262 IKFLQTMHTIRNDLIHMLQTNFTKLRILHHK*IFKI 369
           +K +     IRN+L++ ++   T +++L+H  I KI
Sbjct: 38  VKVIDKRMVIRNNLMYQVKREITAMKLLNHPNIVKI 73


>01_06_1058 -
           34147025-34147069,34147190-34147339,34147983-34148117,
           34148391-34148449,34149142-34149258,34149448-34149625,
           34149715-34149798,34150133-34150201,34150385-34150525,
           34150781-34150873,34151338-34151466,34152033-34152371,
           34152624-34152674
          Length = 529

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 214 IKLLHLHKFLMYLMYEIKFLQTMHTIRNDLIHMLQTNFTKLRIL 345
           IK+LH    +M + +E+K L+T+   +N L + L      ++ L
Sbjct: 266 IKMLHQPSKVMDMEFELKALRTLIAEKNQLCNQLMKELAMIKRL 309


>09_03_0171 - 13062794-13064017
          Length = 407

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 181 TFYYYRILKRGLLSNKIDQY 122
           T ++Y I KR LLS ++D++
Sbjct: 114 TLFFYSIAKRELLSKRVDEF 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,252
Number of Sequences: 37544
Number of extensions: 149878
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)