Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J02
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine re...    29   1.4  
AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin prot...    28   3.3  
AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin prot...    28   3.3  
Z70755-2|CAA94785.1|  220|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine re...    26   10.0 

>AF000261-7|AAB52927.2|  340|Caenorhabditis elegans Serpentine
           receptor, class x protein98 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 190 LLHMFYIFIKLLHLHKFLMYLMYEIKFLQTMHTIRNDLI 306
           LL  F IFI +L LH+F+   M     L +  T+ N +I
Sbjct: 62  LLSAFGIFINILVLHRFIAKNMSSFYLLCSSKTVSNSII 100


>AF067607-11|AAM81119.1|  412|Caenorhabditis elegans Innexin protein
           18, isoform b protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 YIFIKLLHLHKFLMYLMYEIKFLQT 279
           YIFIK LHL   ++  M    FLQT
Sbjct: 204 YIFIKALHLANVILQFMLLNSFLQT 228


>AF067607-10|AAM81118.1|  436|Caenorhabditis elegans Innexin protein
           18, isoform a protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 YIFIKLLHLHKFLMYLMYEIKFLQT 279
           YIFIK LHL   ++  M    FLQT
Sbjct: 204 YIFIKALHLANVILQFMLLNSFLQT 228


>Z70755-2|CAA94785.1|  220|Caenorhabditis elegans Hypothetical
           protein K06A4.2 protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 322 LFVTCELSHSVLCALFEEILFHTLNTLKTYE 230
           +FV CE +   + AL   ++ HT   L+ YE
Sbjct: 161 VFVICEFALPAIWALLSFLIVHTTRRLRCYE 191


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 250  LMYEIKFLQTMHTIRNDLIHMLQTNFTKLR 339
            L Y         TI   ++H LQTNFT +R
Sbjct: 2517 LQYTFSTKNATETIDTTVLHNLQTNFTYIR 2546


>U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical
           protein K09H11.6 protein.
          Length = 166

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 319 FVTCELSHSVLCALFEEILFHTLNTLKTYEGV 224
           F+ C L H ++C L   I F  + T  T+  V
Sbjct: 90  FIICALLHLIICILLSAIFFLYVVTRATFYSV 121


>AF016445-3|AAC69063.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein133 protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 343 EFVAS*SLFVTCELSHSVLCALFEEILFHTLNTLK 239
           EF+   S F T  +SH + C LF  I    +N L+
Sbjct: 215 EFLLKISTFTTAIVSHIIPCILFPIITIILINELR 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,073,930
Number of Sequences: 27780
Number of extensions: 168579
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)