Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_J02
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.3  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 338 EFSITNRSSKSALHSTFVKS*Y 403
           EF++ N +S+S +HS  ++  Y
Sbjct: 321 EFALVNYASRSDMHSDNIEKKY 342


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 338 EFSITNRSSKSALHSTFVKS*Y 403
           EF++ N +S+S +HS  ++  Y
Sbjct: 321 EFALVNYASRSDMHSDNIEKKY 342


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 196 VIMCRTFYYYRILKRGLLSNKIDQYEN 116
           ++MC+TF Y      G  S  +++  N
Sbjct: 18  IVMCQTFTYSHGWTNGKRSTSLEELAN 44


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 202 TCVIMCRTFYYYRIL 158
           TCV+ C T  YY I+
Sbjct: 104 TCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 202 TCVIMCRTFYYYRIL 158
           TCV+ C T  YY I+
Sbjct: 157 TCVLSCWTNIYYIII 171


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 267 ISSNNAHNTE*LNSHVTNKLYEATNSPSQI 356
           +S+   HN    N++   KLY   N   QI
Sbjct: 307 LSNKTIHNNNNYNNYNNKKLYYNINYIEQI 336


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -3

Query: 205 KTCVIMCRTFYYYRILKRGLLSNKIDQYENITKNVC*V*KMCKRSTLRTSESI 47
           K   I   + Y+Y IL+  L+  +I   +   +      K C   T  T E +
Sbjct: 2   KAAEIWLVSLYWYLILQIALVYGEISDIDEFREMTSKYRKKCIGETKTTIEDV 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,314
Number of Sequences: 438
Number of extensions: 1915
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)