Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I24
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   6.2  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   6.2  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.2  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.2  

>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 431 YKNLLRNTYIILIFRVETTIH--KKIEVHIISTGYKHRKITITYQKAFVKIR 580
           Y   LR T +  +    TT+H   K  + +    Y HR++   Y K FV+ R
Sbjct: 178 YSTSLRVTLLTFLLSF-TTLHFVNKFSLLLKDQQYLHRQVFFEYDKKFVEPR 228


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 264 INKDTFVASKATKVSPAT*SFA*TSRPSWRGGL 166
           ++KDTFV  K      AT S+  T RP    GL
Sbjct: 226 LDKDTFVKGKINSAGVATLSYFQTVRPGVTVGL 258


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 507 TSIFLCIVVSTRKIRIIYV 451
           TS FLCI  S ++ R++Y+
Sbjct: 450 TSTFLCIYDSAKRSRLVYI 468


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 354 PENVYGLCSRDIFFYFSFSFLRPCLYIKICYVTHILFLF-SVSKL 485
           PE  YG  +     Y  F+FL  CLY +  Y  ++ FL  S+S+L
Sbjct: 85  PEPQYGNNAVTNTKYDLFTFLPKCLYEQFRYFYNMYFLLVSLSQL 129


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 559  LISNSNFTMFVAS*NNVNLDFFMYRSFD 476
            L SNSN T F+ S  NVN D   Y  F+
Sbjct: 981  LKSNSNGTYFMTSLANVNRDSVGYVDFE 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,310
Number of Sequences: 5004
Number of extensions: 54122
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)