Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I24
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    28   5.8  

>AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical
           protein Y54F10BL.1 protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 372 LCSRDIFFYFSFSFLRPCLYIK-ICYVT 452
           +CS DI+F  SF+ L  C +IK +C+++
Sbjct: 134 ICSNDIYFVESFAPLLECFHIKEVCFIS 161


>Z81116-9|CAB03296.2|  466|Caenorhabditis elegans Hypothetical
           protein T06C12.10 protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 381 RDIFFYFSFSFLRPCLYIKICYVTHIL-FLFSVSKLRY 491
           RD    FS   L  C+++ + Y+ HI+ F +S+ +L +
Sbjct: 61  RDHLDGFSLLALSGCIFVSVLYLVHIIAFFYSIYRLHH 98


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical protein
            F54E12.2 protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 434  KNLLRNTYIILIFRVETTIHKKIEVHIISTGYKHRKIT 547
            +N++     ++I    T++   IE+HI S+G+K+  IT
Sbjct: 927  ENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSIT 964


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
            protein F54E12.2 protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 434  KNLLRNTYIILIFRVETTIHKKIEVHIISTGYKHRKIT 547
            +N++     ++I    T++   IE+HI S+G+K+  IT
Sbjct: 927  ENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSIT 964


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,553
Number of Sequences: 27780
Number of extensions: 302942
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)