Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I23
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    20   8.1  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  KGIRKSFRNKVSVKHLSSSFYSP 81
           +G   +F+  V VKH  S  Y P
Sbjct: 98  EGFDGTFQTNVVVKHNGSCLYVP 120


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  KGIRKSFRNKVSVKHLSSSFYSP 81
           +G   +F+  V VKH  S  Y P
Sbjct: 98  EGFDGTFQTNVVVKHNGSCLYVP 120


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 390 PKCSGNTRCVLPYCY 346
           P C   T+CVLP C+
Sbjct: 160 PDCDP-TQCVLPDCF 173


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  KGIRKSFRNKVSVKHLSSSFYSP 81
           +G   +F+  V VKH  S  Y P
Sbjct: 98  EGFDGTFQTNVVVKHGGSCLYVP 120


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  KGIRKSFRNKVSVKHLSSSFYSP 81
           +G   +F+  V VKH  S  Y P
Sbjct: 98  EGFDGTFQTNVVVKHGGSCLYVP 120


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 13  KGIRKSFRNKVSVKHLSSSFYSP 81
           +G   +F+  V VKH  S  Y P
Sbjct: 98  EGFDGTFQTNVVVKHGGSCLYVP 120


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  RQTYILEI*SRIFWLLDYQLTGVILRSAI 163
           + T ILEI   + +++   +TG +  S I
Sbjct: 75  KSTAILEIAFEVIFIVTVWMTGAVKHSKI 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,614
Number of Sequences: 336
Number of extensions: 2066
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)