Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I21
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.38
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.51
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.88
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 2.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 6.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 6.2
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.2
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 6.2
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 6.2
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 8.2
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 8.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.13
Identities = 43/195 (22%), Positives = 72/195 (36%), Gaps = 11/195 (5%)
Frame = -3
Query: 660 NSSAPXKTASMKTTDNATSXSNVSMESPQPSSARTVLCSTLL---SGRXXXXXXXXXXXX 490
++S P T S +T +A++ + S SP PS++ + ST + G
Sbjct: 82 SASTPIITESTSSTSSASTTGSSS--SPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVP 139
Query: 489 AIGLNSS----PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTP 322
+S+ PP+ T + + LP + C TS T+ T T P
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTS--TSIPPTGGSSSLSTPITPTVPP 197
Query: 321 VPASG---PIPPEDKDVTN-NKKKQRTASSAPKSSWLMPKDRXXXXXXXXXXXTANVSTY 154
S PIPP T+ N T S++ +S +P ST
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS 257
Query: 153 A*TVSSPVTSAAKSE 109
+ ++ P TS + ++
Sbjct: 258 STSIPIPPTSTSSTD 272
Score = 31.1 bits (67), Expect = 0.17
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 5/149 (3%)
Frame = -3
Query: 648 PXKTASMKTTDNATSXSNVSMES-PQPSSARTVLCSTLL--SGRXXXXXXXXXXXXAIGL 478
P T+S TS S+ S P P+++ + ST + +G +
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 312
Query: 477 NSSPPSPTHNVPAAMDSLPIP-TPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPI 301
S+PP P S P+P T T+ST+ P TST ++ P
Sbjct: 313 TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
Query: 300 PPEDKDV-TNNKKKQRTASSAPKSSWLMP 217
P T++ T++S S+ + P
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCTTSTSIPP 401
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 336 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 235
S+STP PAS PP ++++K R+ +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 657 SSAPXKTASMKTTDNATSXSNVSMESPQPSSARTVLCSTLLS 532
SS+ TAS+ T+ + S S + SP P+++ T S++LS
Sbjct: 94 SSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.88
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 3/154 (1%)
Frame = -3
Query: 681 SLQLQAPNSSAPXKTASMKTTDNATSXSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXX 502
S ++ SS+ ++ T+ +S S+ S S QPS + T ST S
Sbjct: 152 STSVEVSISSSSLSSSDPLTSSTFSSLSS-STSSSQPSVSSTS-SSTFSSAAPTSTSSSY 209
Query: 501 XXXXAIGLNSSPPSPTHNVPAAMDSLP---IPTPLCATSSTTAXXXXXXXXXXXPAFTST 331
++ +SS PS + + SL IP+ ++SST++ + +S+
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSS 269
Query: 330 STPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 229
S+ + +S ++ ++SS+P S+
Sbjct: 270 SSIISSSSSSSSSPTSTSSTISSSSSSSSSPTST 303
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.2
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Frame = -3
Query: 591 SMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXAIGLNSSPP-SPTHNVPAAMDSLPIP 415
+ME PQ + V ST S R N++ P T P S P P
Sbjct: 834 NMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTP 893
Query: 414 TPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPEDKD 283
+ T A + STP P P+PP +D
Sbjct: 894 FEIANKQQATEPISAPF------ATETISTPAPVKPPVPPSRRD 931
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/85 (24%), Positives = 31/85 (36%)
Frame = -3
Query: 471 SPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIPPE 292
+PP P VP+ +PIPT +++ P+ S P P+ P P
Sbjct: 1031 APPIP---VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Query: 291 DKDVTNNKKKQRTASSAPKSSWLMP 217
+ K A PK S +P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVP 1112
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 439 GGDIVSWAWGAGVQSY 486
G I+SW+WG G +S+
Sbjct: 140 GSSILSWSWGLGFESF 155
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = -2
Query: 178 NDCQRFYV--CLNGVEPRDLGCQVGEVYNEESQK----CDAPENVR---GCEDWYKDSEE 26
N C++ + C+N L C GE+YN+ES K C E V C +K++EE
Sbjct: 209 NQCEKLVINACINPTTAT-LDCVNGELYNDESAKELFRCIIKECVDIFFKCIPLFKNNEE 267
Query: 25 A 23
A
Sbjct: 268 A 268
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -3
Query: 471 SPPSPTHNVPAAMDSLPIPT--PLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPIP 298
+PP+P +P A+ ++P+P+ P A ++ P S+ VP+ P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 297 PEDKDVTNNKKKQRTASSAPKSSWLMPKD 211
P+ S +SS P++
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQE 1565
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 221 INQLLFGALEAVLCFFLLFVTSLSSG 298
I LE +LCFFL++ T+ S G
Sbjct: 47 IRDSFLSQLENILCFFLVYRTTYSFG 72
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.2
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 7/193 (3%)
Frame = -3
Query: 681 SLQLQAPNS-SAPXKTASMKTTDNATSXSNVSMESPQPSSARTVLCSTLLSGRXXXXXXX 505
S L + NS SA +++ T+ N+T+ ++VS +P +++ + S++ S
Sbjct: 372 STPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS----TPLSS 427
Query: 504 XXXXXAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTS- 328
A +S+P S ++ A S TPL + +STTA + T+TS
Sbjct: 428 ANSTTATSASSTPLSSVNSTTATSAS---STPLSSVNSTTATSASSTPLTSVNSTTATSA 484
Query: 327 -----TPVPASGPIPPEDKDVTNNKKKQRTASSAPKSSWLMPKDRXXXXXXXXXXXTANV 163
T V ++ +T+ T+ S+ S+ +AN
Sbjct: 485 SSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANS 544
Query: 162 STYA*TVSSPVTS 124
+T S+P+TS
Sbjct: 545 TTATSASSTPLTS 557
Score = 25.4 bits (53), Expect = 8.2
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 1/147 (0%)
Frame = -3
Query: 666 APNSSAPXKTASMKTTDNATSXSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXA 487
A +SS AS T ++ + S+++ + +++ ++ ST+ S +
Sbjct: 208 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI-SSTVSSSTPLTSSNSTTAATS 266
Query: 486 IGLNSSPPSPTHNVPAAM-DSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPAS 310
SS S +N + + S P TPL + +STTA TS ++ S
Sbjct: 267 ASATSS--SAQYNTSSLLPSSTPSSTPLSSANSTTA------TSASSTPLTSVNSTTTTS 318
Query: 309 GPIPPEDKDVTNNKKKQRTASSAPKSS 229
P + N + SS P SS
Sbjct: 319 ASSTPLSSVSSANSTTATSTSSTPLSS 345
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 631 YEDDRQCDKXFECVDGVATTKLCPDGLVFDPTIRK 527
Y DD ++ E V G T +C ++FD TIR+
Sbjct: 494 YLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 26 FLRVL-VPVLASANVLRRIAFLALFVINLSDL 118
FL+++ P+L++ VLR I F A+ +N L
Sbjct: 583 FLKIISFPLLSNDKVLREIEFFAIHEVNFRSL 614
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 303 IPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 211
+PPE +++ + +KQ+ K SWL +D
Sbjct: 162 LPPEHRNIWFDMEKQKKEELKNKHSWLYNED 192
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -2
Query: 415 DPSVCNIFYNCIEGEATEVKC 353
+P CN+ Y CIE + C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.2
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = -3
Query: 477 NSSPPSPTHNVP-AAMDSLPIPTPLCATSSTTAXXXXXXXXXXXPAFTSTSTPVPASGPI 301
+SS P + P ++ S P +TSS A STS+ P+S I
Sbjct: 472 SSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSII 531
Query: 300 PPEDKDVTNNKKKQRTASSAPKSS 229
V ++ T+SS+ SS
Sbjct: 532 SSPMTSVLSSSSSIPTSSSSDFSS 555
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 30 SESLYQSSHPRTFSGASHFWLSSL*TSPTWQPRSR 134
++ L +S HP + SG S+ +++S WQ R R
Sbjct: 728 NDKLIKSIHPGSLSGISNSFVNSKHPIEQWQSRLR 762
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 218 GINQLLFGALEAVLCFFLLFVTSLSSGGIGPDAG 319
GI +GA +L F F S+ G PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = -3
Query: 660 NSSAPXKTASMKTTDNAT--SXSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXA 487
++S P A +T + + S SNV+ P ++++ + +S +
Sbjct: 465 SASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVGPVRISSNRRSRKFSSSSRVS 524
Query: 486 IG--LNSSPPSPTHNVPAAMDSLPIPTP 409
+ L SPPSP+ + +A S TP
Sbjct: 525 VSNLLAGSPPSPSSSTKSASSSYSTTTP 552
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 339 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 229
TSTSTP A+ P P V K + +++ A +S
Sbjct: 77 TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,024
Number of Sequences: 5004
Number of extensions: 60457
Number of successful extensions: 255
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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