Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I20
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    31   0.20 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   4.3  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    26   5.7  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   7.5  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 79  VATTIVLCTYLNNVYITFVSEIRKSFCTERYY 174
           + TT+    Y+ ++  +++S+IR+ +CT  +Y
Sbjct: 104 IGTTVGFAAYMLDIVTSWLSDIRRGYCTSHWY 135


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 643 KNSHENNPPSAFFCSKSNEPV*NMHYHEYI 732
           +++H NNPP A     SNE V + H  EY+
Sbjct: 151 RSNHLNNPPEAPITEASNEYVYSFHL-EYV 179


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 102 YLLKQCIHNVCIGNTKIIL 158
           YLLKQC+ N+ + N+ I L
Sbjct: 652 YLLKQCLSNISLSNSVISL 670


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 7   LLRVRLLYTDYSYIKHRLLSVILHVATTIVLCTYLNNVYITFVSEIR 147
           +L  R LY    +IK R  + I+  +   +LC Y+  V  + + E++
Sbjct: 27  ILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEELQ 73


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 4   FLLRVRLLYTDYSYIKHRLLSVILHVATTIVLCTYLNNVY 123
           +L R+R +  DY+     L+S I     T+    +L  VY
Sbjct: 253 YLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFLEAVY 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,032
Number of Sequences: 5004
Number of extensions: 71288
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)