Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I20
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 37  YSYIKHRLLSVIL-HVATTIVLCTYLNNVYITFVSEIRKSFCTERYY 174
           Y+ +   ++ V L H+ +TI +C    N+ I F+S+I    CT   Y
Sbjct: 247 YALVFQTIIPVFLMHIPSTISMCAAFTNISIEFISQILS--CTISLY 291


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 614 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 730
           + E   ++  RI+  KIIH L  F P    R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 614 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 730
           + E   ++  RI+  KIIH L  F P    R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289


>AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +1

Query: 4   FLLRVRLLYTDYSYIKHRLLSVILHVATTIVLCTYLNNVYITFVSEIRKSF 156
           F+L V +   DY+  ++ +LS IL +  T     Y + +Y+TF+  I++ +
Sbjct: 58  FILPVTMTDEDYAAFRNSILSPILTINCTFF---YEHPLYLTFLMSIQRIY 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,069,428
Number of Sequences: 27780
Number of extensions: 387357
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)