Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I19
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 142 5e-35
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 45 1e-05
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 38 0.001
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 29 0.46
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 29 0.61
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 26 4.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.6
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 10.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 10.0
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 10.0
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 142 bits (343), Expect = 5e-35
Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 22/222 (9%)
Frame = -3
Query: 647 RKSLFDDRPTEIQELTYIIKGDLNSLNQQIARLGEMPRGXXXXXXXXXXXV----LALQS 480
RK+LFDDRP EIQELT+ IK L+SLN IA L ++ +G ++LQ+
Sbjct: 70 RKTLFDDRPVEIQELTFQIKQSLSSLNSDIASLQQVVKGNRNKPAQMNQHSENVVVSLQN 129
Query: 479 RLASMSNQFKQVLEVRSENLKQQNSRREQF-----SRVTRVVKEVPSL------------ 351
LA+ S FK +LE+R++N+K +R E+F ++ S+
Sbjct: 130 SLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMNANPLINSGNSISPFADYNDPKPE 189
Query: 350 LQQDEVSIDLGEATSLQAQQFAFRDD-TDSYVQQRAETMHNIESTIVELGGIFQQLAHMV 174
+D +S++LG+ + + +Q A + TD+Y QQR ++ NIESTI ELGGIF QLA MV
Sbjct: 190 ANEDYLSLNLGDGANTRYEQMALLESQTDTYSQQRMSSIQNIESTITELGGIFSQLAQMV 249
Query: 173 KEQDEAIGRIDANIHEAEMNVEAGHREILKYFQNVTGNRALM 48
EQ E + RID + + N+ + REI+K+++ ++ NRAL+
Sbjct: 250 SEQRETVQRIDMHTDDIVSNIGSAQREIVKFYERMSSNRALL 291
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/128 (20%), Positives = 62/128 (48%)
Frame = -3
Query: 467 MSNQFKQVLEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEATSLQAQQF 288
+SN ++ ++ K+Q++ ++ + + V S L + + + ++T Q
Sbjct: 141 LSNLASRIQTESAQFRKKQSTYLKKLRGLNANISPVESKLDETVSDVAISQSTIQQVALM 200
Query: 287 AFRDDTDSYVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDANIHEAEMNVE 108
+ + + ++ + I I+EL +FQ L +V EQ + RID NI + +++ +
Sbjct: 201 EEQGEDEQAIRHE-RAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAK 259
Query: 107 AGHREILK 84
+ +E++K
Sbjct: 260 SAEKELIK 267
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 260 VQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDANIHEAEMNVEAG 102
VQ+R + IE TI EL +FQ +A MV+EQ+ + +I + N+ G
Sbjct: 184 VQERHADIKRIERTIAELAQLFQDMATMVQEQEPMVDKIVTDAVNVRTNMGEG 236
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 29.5 bits (63), Expect = 0.46
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = -3
Query: 437 VRSENLKQQN-SRREQFSRVT--RVVKEVPSLLQQD--------EVSIDLGEATSLQAQQ 291
+++ N +QQ S + FS +T + K+V +L + E SID+ E TS A
Sbjct: 726 IKAHNKQQQRRSIKSFFSCITPNKPTKDVNDILSEKSAFSPADYEHSIDIREHTSYDANS 785
Query: 290 FAFRDDTDSYVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDAN 135
D D+Y Q + S + EL I + ++ DE IDAN
Sbjct: 786 MDNDSDEDNYEQAESIISSLSSSALSELSYISESSMNIGSRLDERF--IDAN 835
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 29.1 bits (62), Expect = 0.61
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = -3
Query: 446 VLEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEATSLQAQQFAFRDDTD 267
+L V L+++N R S + ++ QD+V E + + T+
Sbjct: 158 LLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGKLFPVETLFLQKPTE 217
Query: 266 SYVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRI-DANIHEAE 120
+YV ET+ NI ST G I L+ KE + I +I D+ IH +E
Sbjct: 218 NYVDSAIETVININSTYPP-GDILVFLSGR-KEIEYCIKKIEDSLIHASE 265
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 398 EQFSRVTRVVKE-VPSLLQQDEVSIDLG 318
EQ S V +++E +P L DE+ ID+G
Sbjct: 458 EQLSNVAEILREEMPWLRDTDEIEIDVG 485
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = -3
Query: 449 QVLEVRSENLKQQNSRRE---QFSRVTRVVKEVPSLLQQDE-VSIDLGEATSLQAQQFAF 282
+++E++ E KQQNS+ E + V +LL + +++D E ++ A
Sbjct: 832 EIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIALDKEEILRRTQERLAN 891
Query: 281 RDDTDSYVQQRAETMHNIESTIVEL 207
+D+ S +Q+ E + +++ ++
Sbjct: 892 IEDSFSETKQQNENLQRESASLKQI 916
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.6
Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 3/181 (1%)
Frame = -3
Query: 614 IQELTYIIKGDLNSLNQQIARLGEMPRGXXXXXXXXXXXVL---ALQSRLASMSNQFKQV 444
+QE + ++ L+ QI+R+ E + L+S+L ++ + +
Sbjct: 395 LQEQLHKANEEIEFLHDQISRMNEEGKNFEDIMLQFRSLEEERDVLESKLQTLEDDNNSL 454
Query: 443 LEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEATSLQAQQFAFRDDTDS 264
+ S Q S R Q +R K LL L E T+++ Q+ + ++
Sbjct: 455 RLMTSSLGNQIESLRTQ-NREIDEEKNHLRLLASKNSDKALAE-TNIRLQEVT--KELET 510
Query: 263 YVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDANIHEAEMNVEAGHREILK 84
+ + ++ I E G+ ++ + KE+D I ++ I E+NV + I +
Sbjct: 511 LRMKNSNDLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570
Query: 83 Y 81
Y
Sbjct: 571 Y 571
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 10.0
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 150 TNSFILFFYHMSQLLKYASQLHNSAFNVMHSFSSLLYI*VCIISECKLLCL*TCSFTQIY 329
T F F ++ LK Q+ S F++++ SL + CI S KL + C F +
Sbjct: 195 TIEFDSFNSNVPVTLKLQRQIFLS-FSIVYGLISLWWAIRCICSRTKLHLVQVCLFCW-F 252
Query: 330 AYFIL 344
++FIL
Sbjct: 253 SFFIL 257
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 338 EVSIDLGEATSLQAQQFAFRDDTDSYVQQRAETMHN 231
E ++L +A S ++RD+ S+V A +MHN
Sbjct: 99 EAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHN 134
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 278 DDTDSYVQQRAETMHNIESTIVELGGIFQQLAHMVKE 168
D SY++ R + H E I E+G + + L +V E
Sbjct: 814 DLVQSYLELREDQFHTEEDIIYEVGLVRKVLTRLVHE 850
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,470
Number of Sequences: 5004
Number of extensions: 49611
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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