Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I19
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412... 99 3e-21
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 31 0.64
06_03_1376 - 29687417-29687536,29687622-29687688,29688448-296885... 31 1.1
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 30 1.9
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 3.4
05_01_0146 - 953957-956278,956468-956786,957185-957213 28 7.8
02_01_0642 - 4803464-4805665,4806231-4806320 28 7.8
>01_01_0560 +
4117203-4117458,4119359-4119609,4119691-4119860,
4120188-4120385,4120922-4121081
Length = 344
Score = 99.1 bits (236), Expect = 3e-21
Identities = 85/238 (35%), Positives = 118/238 (49%), Gaps = 38/238 (15%)
Frame = -3
Query: 647 RKSLFDDRPTEIQELTYIIKGDLNSLNQQIARL-----GEMPRGXXXXXXXXXXXVLA-- 489
R S+FDD EIQELT +IK D+ +LN + L + G +
Sbjct: 89 RTSVFDDPTVEIQELTAVIKKDITALNSAVVDLQVLCNSQNESGNLSKDTTNHSTTVVDN 148
Query: 488 LQSRLASMSNQFKQVLEVRSENLK-QQNSRR---------------EQFSRVTRVVKE-- 363
L++RL S + +FK+VL +R+ENLK +N R+ Q VTR E
Sbjct: 149 LKNRLMSATKEFKEVLTMRTENLKVHENRRQMFSSSAANNASNPFVRQRPLVTRDGPESS 208
Query: 362 VPS-----------LLQQDEVSIDLGEATSLQAQQFAFRD--DTDSYVQQRAETMHNIES 222
VP L Q+ + + D G A+S +Q F + DSY+Q RAE + N+ES
Sbjct: 209 VPPAPWASDSATTPLFQRKKTNGDHG-ASSSSSQPFMQQQLVQQDSYMQSRAEALQNVES 267
Query: 221 TIVELGGIFQQLAHMVKEQDEAIGRIDANIHEAEMNVEAGHREILKYFQNVTGNRALM 48
TI EL IF QLA MV +Q E RID N+ + NVE ++LKY +++ NR LM
Sbjct: 268 TIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLM 325
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 31.5 bits (68), Expect = 0.64
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 452 KQVLEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDE-VSIDLGEATSLQAQQFAFRD 276
+QV E ++ +K++ + R+ V+KE P L++ E ++ E L+A R
Sbjct: 922 QQVEEAKAMIVKEREAARKAIEEAPPVIKETPVLVEDTEKINSLTAEVEQLKALLQTERQ 981
Query: 275 DTDSYVQQRAETMHNIESTIVELGGI---FQQLAHMVKEQDE 159
T++ ++ AE E I + G +QL V+ +E
Sbjct: 982 ATETAKKEYAEAERRNEELIKKFEGAEKKIEQLQDTVQRLEE 1023
>06_03_1376 -
29687417-29687536,29687622-29687688,29688448-29688504,
29689365-29689435,29690326-29690385,29690470-29690601,
29690828-29690986
Length = 221
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 215 VELGGIFQQLAHMVKEQDEAIGRIDANIHEAEMNVEAGHREILKY 81
+E G I +LA +E E ++D IH + +EA +++KY
Sbjct: 157 LERGRIRDELAKQNEETTELTTKLDKEIHSLKAQLEAAKYDVIKY 201
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -3
Query: 485 QSRLASMSNQFKQVLEVRSENLKQ-QNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEAT 309
++ +AS+ + + + + + L++ + + ++ +T +KEV SLL Q I+ EA
Sbjct: 307 ENTIASLKKEMEVMTSMHEQQLQKIELTAKQMEEHLTTKIKEVESLLVQSNKKIEEVEAA 366
Query: 308 SLQAQQ 291
SL Q
Sbjct: 367 SLLKSQ 372
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 470 SMSNQFKQVLEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEATSLQAQQ 291
SM+N +++ + + + R + S ++ S++ D +S+D G + Q +
Sbjct: 1915 SMANNYEENMLLCDGAESNYSHREDADSLFANALRTNSSIIVADAISVDGGHGNAKQTET 1974
Query: 290 FAFRDDTDSYVQQRAETMHN-IESTIV 213
D ++HN + ST+V
Sbjct: 1975 ETIYSSVDDSTSSDFSSVHNLVRSTVV 2001
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 27.9 bits (59), Expect = 7.8
Identities = 30/126 (23%), Positives = 54/126 (42%)
Frame = -3
Query: 485 QSRLASMSNQFKQVLEVRSENLKQQNSRREQFSRVTRVVKEVPSLLQQDEVSIDLGEATS 306
+ RL N+ K+V + E L+ + T + K L+Q ID EA
Sbjct: 150 RDRLVGELNEAKRVADETHEKLQDALMAKRWAEEATEIEKFRADELEQ--AGID--EA-- 203
Query: 305 LQAQQFAFRDDTDSYVQQRAETMHNIESTIVELGGIFQQLAHMVKEQDEAIGRIDANIHE 126
Q ++ ++ + + Q A + + +T EL ++LA + + A+G D +
Sbjct: 204 -QKREEEWQREIECVRGQHAADLETLVTTTEELERFRRELAMANEAKKAALGHADDAMKI 262
Query: 125 AEMNVE 108
AE+N E
Sbjct: 263 AEVNAE 268
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Frame = -3
Query: 494 LALQSRLASMSNQFKQVLEVRSE--NLKQQ-NSRREQFSRVTRVVKEVPSLLQQ-----D 339
+A+Q + + +S +++ EV SE LKQ +S+ +Q +V +++ +Q D
Sbjct: 481 IAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQTLQNKLD 540
Query: 338 EVSIDLGEATSLQAQQFAFRDDTDSYVQ-QRAETMHNIESTIVELGGIFQQLAHMVKEQD 162
+ +A S+ + + S V+ + + ++ I G + H + +
Sbjct: 541 SMKFSCSQAESVVQKIAELTGNLASSVEGEEMDIYALLDDEISSTGTALKSNLHKHNQLE 600
Query: 161 EAIGRIDANIHEAEMNVEAGHREI 90
I + ++H+ +M++ A H +
Sbjct: 601 ADIEMLKESLHQKDMDLRAAHEAL 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,760
Number of Sequences: 37544
Number of extensions: 283656
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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