Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I16
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 138 HFTDSVRRAGRGRHYDIFRXKCLICKYFINRYWLKSL 28
           H      R  +G HYD+    C  CK F  R WL  +
Sbjct: 60  HLCSICSRPAQGYHYDVI--SCKGCKTFFRRMWLSKI 94


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 378 NLSVLLHTSILITYCTKVMPTHLSSLTHCTAVN 280
           N+S++ +  +L+ YC + M  HLS  T+CT  N
Sbjct: 35  NISLVKYICLLV-YCIRSMQEHLSVPTYCTDPN 66


>Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical
           protein H13N06.7 protein.
          Length = 119

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 376 LICPPSYLNINYILYKSNANTFIESDPLHSCELVKC 269
           ++ PP+  NIN++++ S  + F E  PL  C+   C
Sbjct: 8   ILKPPTVANINHLMHPSPEHAFREKHPL--CQYQMC 41


>AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical
           protein Y54E10A.6 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 381 HNLSVLLHTSILITYCTKVMPTHLSSL 301
           HNLS  LHT IL     +V+P  LS+L
Sbjct: 160 HNLSAKLHTIILSHNSIEVIPDSLSNL 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,959
Number of Sequences: 27780
Number of extensions: 167480
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)