Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I13
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    27   2.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   4.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.6  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 442 IPALGSWCGLLVSPAKDARASATAFSMKWS 531
           I  +GS+ GLL SP     A + AF   WS
Sbjct: 198 ILTMGSFAGLLPSPYLSTYAGSKAFLSNWS 227


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 404 RTMLEFQE-LMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATR 228
           +T ++F E L+    L   NG+LR    R  S + +    ++ ALDD+       +W T 
Sbjct: 97  KTQVDFTEQLIPKKSLNKLNGTLRETMSRMPSFESISLSETSNALDDSCFND---DWITI 153

Query: 227 EREAS 213
           E E S
Sbjct: 154 ESEFS 158


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 320 QCSRQEVVAHYSARALDDAMREQMAREWATRER 222
           Q   Q+ + H  A  LDDA  ++ ARE  TRER
Sbjct: 177 QSGTQDFIGHAMALYLDDAYLKKPARE--TRER 207


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 333 RSQRPVPVEQLEYRHQLLEFQHRPTFVRLQHE-PKRSDT 446
           R+  P+P +  E +  L  F+HR +F +++ E P   D+
Sbjct: 329 RANSPIPSQLSENKLTLESFEHRKSFDQVREEAPLEEDS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,004
Number of Sequences: 5004
Number of extensions: 39905
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)