Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I13
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1085 - 8886868-8887556,8887629-8888574 31 0.64
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 30 1.9
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 28 5.9
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 28 5.9
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 28 7.8
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 28 7.8
10_01_0161 + 1817783-1818862 28 7.8
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 28 7.8
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 329 RERQCSRQEVVAHYSARALDD--AMREQMAREWATREREASSSGGGV 195
R R+ R VV SAR +D A+RE+ + R R AS GGGV
Sbjct: 134 RWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGV 180
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 131 AHVPPASRPEARVQISPAPRVVLRHRTKTLHAPWWPILAPSVPASRR 271
AH PA P + +P PR RH T + P P A + P S R
Sbjct: 59 AHPLPAPFPNLSGEPAPTPRAPSRHATPSSSPPSTPSSASAPPPSGR 105
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 481 ETRATHTRTPALVSLRLGSCWRR 413
E TH P L++LRL CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 463 TRTP-ALVSLRLGSCWRRTKVGRCWN 389
T+ P + VSLR+G C R K GRC++
Sbjct: 513 TKLPFSFVSLRIGMCKDRLKKGRCFS 538
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 220 KRLRPVAEYYARSWRDLNASFGPRGWR 140
KRL+ YY+ WR A F WR
Sbjct: 489 KRLQHAFRYYSHQWRSWGACFVQGAWR 515
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 327 RAAMLAAGSRSALLGPGTRRRDAGTDGARMGHQGA*SVFVRW 202
RAA G +A G +RR+ G + G +G S F +W
Sbjct: 72 RAARARVGGAAAGTGSAAQRREQGKGSHQPGTEGRQSSFKKW 113
>10_01_0161 + 1817783-1818862
Length = 359
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = -1
Query: 407 GRTMLEFQELMTVFQLLHWNGSLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATR 228
GRT QLLHW A++ R C+ + Y + A RE + W
Sbjct: 59 GRTASSLPLRYAAPQLLHWPDDAAAVQLRLCAHGRHLVLYVSMARCSMFREWLDTYWVCL 118
Query: 227 EREASSS 207
+ A+++
Sbjct: 119 DALAAAA 125
>02_05_0225 +
26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = -1
Query: 452 SAGIAAFRFMLEANKGRTMLEFQEL-----MTVFQLLHWNGSLRAMRERQCSRQEVVAHY 288
+A I +FR L ++ LE EL T ++LH + L++M+E + +V+
Sbjct: 331 NAEIMSFRDYLLSSTVSDTLEVWELKDLGHQTAQRILHASDPLQSMQEINQNFPSIVSSL 390
Query: 287 SARALDDAMREQM 249
S LDD++++++
Sbjct: 391 SRMKLDDSIKDEI 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,140
Number of Sequences: 37544
Number of extensions: 377008
Number of successful extensions: 1502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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