Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I13
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical...    32   0.43 
AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical ...    32   0.43 
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    30   1.3  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    29   2.3  
Z66514-6|CAA91345.3|  337|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z46996-10|CAL22702.1|  337|Caenorhabditis elegans Hypothetical p...    29   3.0  
AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical ...    28   7.0  

>AC024696-13|AAK84505.1|  346|Caenorhabditis elegans Hypothetical
           protein F07B7.1 protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
 Frame = -1

Query: 479 DTSNPHQ-DPSAGIAAFRFMLEANKGRTMLEFQELMTVFQLLHWNGSLRAMR------ER 321
           DT +P++ DP+A  A   +M E  +  T+ E         L   NGS+ A++      E 
Sbjct: 87  DTEHPNENDPNASSALEAWMKEWKEFATVNERDRFEAQASLTALNGSMTALKAQLHTVES 146

Query: 320 QCSRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGV 195
            C+R E    +    +D+  R+  AR  ++ E   +SS G +
Sbjct: 147 ICNRLETQIMHE-HHVDNDSRQAQARRSSSAESTGTSSKGNL 187


>AC006697-3|AAF60392.1|  346|Caenorhabditis elegans Hypothetical
           protein W09B7.1 protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
 Frame = -1

Query: 479 DTSNPHQ-DPSAGIAAFRFMLEANKGRTMLEFQELMTVFQLLHWNGSLRAMR------ER 321
           DT +P++ DP+A  A   +M E  +  T+ E         L   NGS+ A++      E 
Sbjct: 87  DTEHPNENDPNASSALEAWMKEWKEFATVNERDRFEAQASLTALNGSMTALKAQLHTVES 146

Query: 320 QCSRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGV 195
            C+R E    +    +D+  R+  AR  ++ E   +SS G +
Sbjct: 147 ICNRLETQIMHE-HHVDNDSRQAQARRSSSAESTGTSSKGNL 187


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 312 RALPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRLQHEPKRSDT 446
           RA+P+ HR Q   P    +++ +L    H     RL  + + +DT
Sbjct: 38  RAVPVGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDT 82


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 312 RALPLAHRSQRPVPVEQLEYRHQLLEFQHRPTFVRLQHEPKRSDT 446
           RA+P+ HR Q   P    +++ +L    H     RL  + + +DT
Sbjct: 99  RAVPVGHRRQHSSPGHLQQFQQELHARHHHANITRLNKKRRNTDT 143


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 344 SLRAMRERQCSRQEVVAHYSARALDDAMREQMAREWATREREASSSGGGV 195
           +L    E   S+ E +   S +ALD++M+E    E  +R REA S  G +
Sbjct: 70  ALNQWAEVMKSKLEKMRQKSKKALDESMKEHSTMEDLSRAREALSEMGNM 119


>Z66514-6|CAA91345.3|  337|Caenorhabditis elegans Hypothetical
           protein K01A11.3 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  RCVGVVEITACGGGARRAASW 98
           + VG VE+  CGGG   A SW
Sbjct: 276 KLVGFVEVEMCGGGEYHAISW 296


>Z46996-10|CAL22702.1|  337|Caenorhabditis elegans Hypothetical
           protein K01A11.3 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  RCVGVVEITACGGGARRAASW 98
           + VG VE+  CGGG   A SW
Sbjct: 276 KLVGFVEVEMCGGGEYHAISW 296


>AC098856-5|AAR12980.1|  263|Caenorhabditis elegans Hypothetical
           protein Y37F4.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 409 LFASSMNLNAAIPALGSWCGLLVSPAKDARASA 507
           +  SS+NL++ +P  GSW G   + + D  A+A
Sbjct: 134 IMGSSLNLDSMLPIAGSWMGTQKTRSIDLVATA 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,578
Number of Sequences: 27780
Number of extensions: 247272
Number of successful extensions: 737
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)