Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I12
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    52   7e-08
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    28   1.2  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    26   3.7  

>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDE 469
           L+G+ NLEFVA PAL PPEV +D Q   Q ++++ +A    LP+ED+
Sbjct: 167 LVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 582 VAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 466
           +++P   PP    D   +  +E+D++D    AL  EDE+
Sbjct: 29  LSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEE 67


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 552 VTMDPQWQNQIEKDLQDAQNTALPEED 472
           VT   +  N+I K ++D +NT LP+ D
Sbjct: 112 VTEINEISNKIPKSIEDLENTLLPQAD 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,704
Number of Sequences: 5004
Number of extensions: 52521
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)