Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I12
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0673 + 24183512-24183514,24183625-24183694,24184203-241842...    54   9e-08
05_07_0205 - 28402436-28402505,28402604-28402681,28402789-284029...    46   2e-05
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023...    45   4e-05
04_04_0495 - 25623562-25623775,25623902-25624004,25624129-256242...    29   2.2  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    29   3.8  
03_05_1138 + 30684014-30684386,30684480-30684865,30684870-306849...    28   6.7  
01_05_0636 + 23852985-23853142,23853253-23853445,23853910-238540...    28   6.7  

>01_05_0673 +
           24183512-24183514,24183625-24183694,24184203-24184259,
           24184348-24184465,24185044-24185133,24185209-24185388,
           24185474-24185551,24185642-24185711
          Length = 221

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 26/49 (53%), Positives = 32/49 (65%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 463
           L GDGNL FV  PAL PP+VT+D   Q Q E +L  A    LP++D+DL
Sbjct: 171 LAGDGNLHFVETPALAPPDVTIDLAAQQQHEAELAAAAAQPLPDDDDDL 219


>05_07_0205 -
           28402436-28402505,28402604-28402681,28402789-28402968,
           28403051-28403140,28403258-28403375,28403461-28403517,
           28404155-28404224,28404317-28404319
          Length = 221

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 463
           L GD NL FV   AL PPEV +D   Q Q E +L  A    LP++D+DL
Sbjct: 171 LAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDDL 219


>06_03_0668 +
           23301578-23301791,23302102-23302199,23302233-23302301,
           23302674-23302961,23303045-23303208,23303344-23303599,
           23303706-23303816,23304109-23304195,23305916-23305985,
           23306093-23306149,23306309-23306426,23307314-23307403,
           23307492-23307671,23307816-23307893,23308016-23308088
          Length = 650

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 466
           L GD NL FV   ALLP +VT+D   Q +IE ++  A    LP+EDED
Sbjct: 599 LTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 646


>04_04_0495 -
           25623562-25623775,25623902-25624004,25624129-25624231,
           25624353-25624562
          Length = 209

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 94  KCIINNSDQIGINTYWAINAK-CFYDNCNKN 183
           K + N  D IGIN Y AI AK C Y  C  N
Sbjct: 18  KLLQNKVDFIGINQYTAIYAKDCIYSPCALN 48


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 401 THLHDPPITKWALGTSVDHIYKSSSSSGRAVFCA-S*RSF-SIWFCH*GSIVTSGGRRAG 574
           T + D  ITK  +G++ D  +K  +S G+A F A +  SF  IWF   G  + +    A 
Sbjct: 149 TLVKDHGITKLVMGSTPDTCFKLKASYGKASFMARNAPSFCEIWFVWRGRHIWTREAAAA 208

Query: 575 MATN 586
           +  N
Sbjct: 209 IGNN 212


>03_05_1138 +
           30684014-30684386,30684480-30684865,30684870-30684962,
           30684963-30685108,30685211-30685454,30685562-30685666,
           30685774-30685956,30686052-30686738
          Length = 738

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQD 502
           LIGDG+ + +A+  +   +V  DP+W    E   +D
Sbjct: 266 LIGDGSGDLMALTLIKQQQVCRDPRWGRCYESYSED 301


>01_05_0636 +
           23852985-23853142,23853253-23853445,23853910-23854033,
           23854285-23854637,23855525-23856530,23856892-23857085,
           23857238-23857324
          Length = 704

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 539 GSIVTSGGRRAGMATNSRLPSPI 607
           G    +GGRR GM   SRLPS +
Sbjct: 58  GKAAGAGGRRFGMVRGSRLPSQL 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,441,418
Number of Sequences: 37544
Number of extensions: 299183
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)