Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I12
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical pr...    66   2e-11
U66216-1|AAB07465.1|  128|Caenorhabditis elegans RAN/Tc4 protein.      46   2e-05
U97015-2|AAB52346.1|   67|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U40941-8|AAX55693.1|  260|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical
           protein K01G5.4 protein.
          Length = 215

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 463
           L+GD NLEFVAMPAL PPEV MDP    + EKDL +A    LP++D+DL
Sbjct: 167 LLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215


>U66216-1|AAB07465.1|  128|Caenorhabditis elegans RAN/Tc4 protein.
          Length = 128

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = -1

Query: 609 LIGDGNLEFVAMPALLPPEVTMDP 538
           L+GD NLEFVAMPAL PPEV MDP
Sbjct: 101 LLGDPNLEFVAMPALAPPEVQMDP 124


>U97015-2|AAB52346.1|   67|Caenorhabditis elegans Hypothetical
           protein F48C1.3 protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +1

Query: 4   VTKVSNHFKLIXLCVSMLWVYKELSYKFVYKCIINNSDQIGINTYWAINAKCFYDNC 174
           +T + N FK + + +S+  +Y     +  ++  INNS+ +  N+  A+      ++C
Sbjct: 9   ITIILNTFKAVCIDISIFGLYLTSKGRLFFENKINNSENLSENSKLAVLGSKLMEHC 65


>U40941-8|AAX55693.1|  260|Caenorhabditis elegans Hypothetical
           protein F35C8.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 475 R*RLINMINGCTQCPF 428
           R R +N+INGC  CPF
Sbjct: 98  RLREVNVINGCAPCPF 113


>U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical
           protein F35C8.1 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 469 RLINMINGCTQCPF 428
           R +N+INGC  CPF
Sbjct: 101 REVNVINGCAPCPF 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,603
Number of Sequences: 27780
Number of extensions: 306347
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)