Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I09
(394 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13238-1|CAA31624.1| 75|Homo sapiens cytochrome c oxidase subu... 68 1e-11
BT007007-1|AAP35653.1| 75|Homo sapiens cytochrome c oxidase su... 68 1e-11
BC000187-1|AAH00187.1| 75|Homo sapiens cytochrome c oxidase su... 68 1e-11
AF067637-1|AAC73061.1| 75|Homo sapiens cytochrome c oxidase su... 68 1e-11
BX538322-1|CAD98096.1| 1210|Homo sapiens hypothetical protein pr... 29 5.5
AK128492-1|BAC87464.1| 1053|Homo sapiens protein ( Homo sapiens ... 29 5.5
AK124904-1|BAC85990.1| 1430|Homo sapiens protein ( Homo sapiens ... 29 5.5
AB037783-1|BAA92600.1| 699|Homo sapiens KIAA1362 protein protein. 29 5.5
>X13238-1|CAA31624.1| 75|Homo sapiens cytochrome c oxidase subunit
VIc preprotein protein.
Length = 75
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 262 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 86
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 85 KKGRFQA 65
K G FQ+
Sbjct: 67 KAGIFQS 73
>BT007007-1|AAP35653.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 262 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 86
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 85 KKGRFQA 65
K G FQ+
Sbjct: 67 KAGIFQS 73
>BC000187-1|AAH00187.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 262 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 86
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 85 KKGRFQA 65
K G FQ+
Sbjct: 67 KAGIFQS 73
>AF067637-1|AAC73061.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Frame = -1
Query: 262 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 86
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 85 KKGRFQA 65
K G FQ+
Sbjct: 67 KAGIFQS 73
>BX538322-1|CAD98096.1| 1210|Homo sapiens hypothetical protein
protein.
Length = 1210
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 166 LIGNERKRKYAEFYRTYDAEKEFEEMRKKGRFQACXR*TSRVEDDDD 26
L+G E++ K + Y T + E ++ RKK R Q R E DD
Sbjct: 678 LVGEEKRSKPIKAYSTENYSLESQKKRKKSRGQTSAANGLRAESLDD 724
>AK128492-1|BAC87464.1| 1053|Homo sapiens protein ( Homo sapiens
cDNA FLJ46642 fis, clone TRACH3003037, weakly similar
to Rho/Rac guanine nucleotide exchange factor. ).
Length = 1053
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 166 LIGNERKRKYAEFYRTYDAEKEFEEMRKKGRFQACXR*TSRVEDDDD 26
L+G E++ K + Y T + E ++ RKK R Q R E DD
Sbjct: 301 LVGEEKRSKPIKAYSTENYSLESQKKRKKSRGQTSAANGLRAESLDD 347
>AK124904-1|BAC85990.1| 1430|Homo sapiens protein ( Homo sapiens
cDNA FLJ42914 fis, clone BRHIP3025161, weakly similar
to Rho/Rac guanine nucleotide exchange factor. ).
Length = 1430
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 166 LIGNERKRKYAEFYRTYDAEKEFEEMRKKGRFQACXR*TSRVEDDDD 26
L+G E++ K + Y T + E ++ RKK R Q R E DD
Sbjct: 678 LVGEEKRSKPIKAYSTENYSLESQKKRKKSRGQTSAANGLRAESLDD 724
>AB037783-1|BAA92600.1| 699|Homo sapiens KIAA1362 protein protein.
Length = 699
Score = 29.1 bits (62), Expect = 5.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 166 LIGNERKRKYAEFYRTYDAEKEFEEMRKKGRFQACXR*TSRVEDDDD 26
L+G E++ K + Y T + E ++ RKK R Q R E DD
Sbjct: 10 LVGEEKRSKPIKAYSTENYSLESQKKRKKSRGQTSAANGLRAESLDD 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,792,201
Number of Sequences: 237096
Number of extensions: 841186
Number of successful extensions: 2077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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