Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I09
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-2|CAC35833.1| 86|Caenorhabditis elegans Hypothetical ... 37 0.004
Z73102-18|CAI91178.1| 90|Caenorhabditis elegans Hypothetical p... 37 0.006
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 27 3.6
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 27 3.6
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 27 3.6
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 27 3.6
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 27 6.3
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 26 8.4
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 26 8.4
>AL132904-2|CAC35833.1| 86|Caenorhabditis elegans Hypothetical
protein Y111B2A.2 protein.
Length = 86
Score = 37.1 bits (82), Expect = 0.004
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -1
Query: 250 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 77
R +L + KR I V+LA++ V+ F R KY EF+ YD +E+ KG
Sbjct: 4 RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKG 63
Query: 76 RFQACXR*TSRVEDDDDFAV 17
C + +++ ++ AV
Sbjct: 64 YMHTCPKELAKLYEEKGKAV 83
>Z73102-18|CAI91178.1| 90|Caenorhabditis elegans Hypothetical
protein B0035.18 protein.
Length = 90
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -1
Query: 250 RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 77
R +L + KR I V+LA++ V+ F R KY EF+ YD+ +E+ KG
Sbjct: 8 RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKG 67
Query: 76 RFQACXR*TSRVEDD 32
C + +++ ++
Sbjct: 68 YMHTCPKELAKLYEE 82
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 145 RKYAEFYRTYD-AEKEFEEMRKKGRF 71
+ Y+E+ YD A K FEE++KK +F
Sbjct: 385 KMYSEYTNNYDRATKLFEELKKKKKF 410
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 145 RKYAEFYRTYD-AEKEFEEMRKKGRF 71
+ Y+E+ YD A K FEE++KK +F
Sbjct: 385 KMYSEYTNNYDRATKLFEELKKKKKF 410
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 145 RKYAEFYRTYD-AEKEFEEMRKKGRF 71
+ Y+E+ YD A K FEE++KK +F
Sbjct: 385 KMYSEYTNNYDRATKLFEELKKKKKF 410
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 145 RKYAEFYRTYD-AEKEFEEMRKKGRF 71
+ Y+E+ YD A K FEE++KK +F
Sbjct: 385 KMYSEYTNNYDRATKLFEELKKKKKF 410
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 145 RKYAEFYRTYD-AEKEFEEMRKKGRF 71
+ Y+E+ YD A K FEE++KK +F
Sbjct: 385 KMYSEYTNNYDRATKLFEELKKKKKF 410
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 175 FKQLIGNERKRKYAEFYRTYDAEK-EFEEMRKKGRFQACXR*TSRVEDDDDFAV 17
FK+L E+K ++ E R D E+ E EE R++ ED+++F +
Sbjct: 284 FKKLTKEEKKAQWEERRRQKDTERAEDEERRREAEEDEDVSDEESDEDEEEFEI 337
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
protein F42C5.10 protein.
Length = 1292
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 172 KQLIGNERKRKYAEFYRTYDAEKEFEE 92
++L+ E++RKY E A +E+EE
Sbjct: 677 ERLLEEEKRRKYLELQNEIKAAREYEE 703
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 26.2 bits (55), Expect = 8.4
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Frame = -1
Query: 289 GESAVSTASKPQMRGLLNAVIKRNIIVALALSGV--AGFTFKQL------IGNERKRKYA 134
G S V+ +P L VI +VA+ L+GV GF F+Q E+KRK
Sbjct: 971 GSSPVNKRKEPVDFPTLAVVIP---LVAMLLAGVAIGGFLFRQHKIHEKDREEEKKRKTQ 1027
Query: 133 EFYRTYDAE---KEFEEMRKKGRFQACXR*TSRVEDD 32
+F DA+ E +E R+K + + R + D
Sbjct: 1028 DFQDQQDADIERAEADEQRRKMNVERAKKDEERAKKD 1064
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,328
Number of Sequences: 27780
Number of extensions: 136196
Number of successful extensions: 454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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