Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I04
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   1.9  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.7  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    25   7.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   7.7  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.7  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 127 EPWHGQSQTSARSSPTTA 180
           +PWH  S   A SSPT+A
Sbjct: 80  QPWHSNSAAPASSSPTSA 97


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 363 VLSDSRRNQSLSADLLFCTYFMSAWYSSFNLFTHSSLSL 479
           VLS SR   SL  D+L      + W  S+N+   SSL L
Sbjct: 351 VLSQSRNIFSLYIDILMEALRRTEWQESYNVSHDSSLPL 389


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 577  LECFND*YPLIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQ 413
            + C N  +P I+V +        + LL   AG + KE+ VN   +    + +Y Q
Sbjct: 1863 ITCINKKWPCILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMDLIGEYEQ 1917


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 553 PLIMVD-EGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRL 377
           PL+ +D E T   +    L++  A   D  L    ++E++ A+IK  +   S  NDW   
Sbjct: 7   PLVWIDCEMTGLEVGKHVLMEVAAIITDGNL--RPVEEKFDAVIKLDEKQLSEMNDWCIE 64

Query: 376 ESDKTG 359
           +  K+G
Sbjct: 65  QHGKSG 70


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 QPKSHGMGNPKPRHVPRPQRLEMI 190
           QP+ +G  NP+P    +PQR  M+
Sbjct: 446 QPQQNGFFNPQPTGYMQPQRTGMM 469


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 195 RHILPPRYIFAVLPSRPGRAISGAV 269
           R I PPR + + + S  GR +SG++
Sbjct: 65  RPIPPPRQVSSTIGSSTGRKVSGSI 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,018
Number of Sequences: 5004
Number of extensions: 61036
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)