Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I04
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0018 + 7118104-7118436,7118543-7118767                          215   3e-56
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871...    29   2.6  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    28   6.0  
12_02_1249 - 27331801-27331896,27331984-27332072,27334020-273340...    28   7.9  

>10_03_0018 + 7118104-7118436,7118543-7118767
          Length = 185

 Score =  215 bits (525), Expect = 3e-56
 Identities = 94/137 (68%), Positives = 108/137 (78%), Gaps = 1/137 (0%)
 Frame = -1

Query: 538 DEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES-DKT 362
           D+GTK  +  IPLL T+AGPRD E W  RLKEEY+ALI Y   NKS DNDWFR+ + +  
Sbjct: 5   DKGTKSVVGEIPLLSTRAGPRDGEAWRQRLKEEYRALIAYTSVNKSKDNDWFRISAANPE 64

Query: 361 GTRWFGKCWFVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHF 182
           GTRW G CW+VHNL +YEF L+FDIP+ YP+ APEI LP LDGKT KMYRGGKICLT HF
Sbjct: 65  GTRWEGTCWYVHNLRRYEFPLQFDIPVAYPQVAPEIELPTLDGKTHKMYRGGKICLTVHF 124

Query: 181 KPLWARNVPRFGIAHAM 131
           KPLWA+N PRFGIAHA+
Sbjct: 125 KPLWAKNCPRFGIAHAL 141


>05_04_0036 +
           17386160-17386318,17386588-17386651,17387089-17387147,
           17387268-17387343,17387521-17387592,17387786-17387873,
           17387992-17388250,17388446-17388561,17388876-17389096,
           17389196-17389224,17389285-17389420,17389567-17389651,
           17389735-17389963
          Length = 530

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 493 TKAGPRDKELWVNRLKEEYQALIKYVQNNKSADN 392
           T   PR  EL +  L+E+Y  L+ Y+Q N S  N
Sbjct: 398 TSLDPRGLELALEYLQEKYGNLLFYIQENGSGSN 431


>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 334 FVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDG 233
           F  NLL      +FD+  T+P   PE A  G DG
Sbjct: 797 FPRNLLLGSLPPDFDVICTHPMFGPESARDGWDG 830


>12_02_1249 -
           27331801-27331896,27331984-27332072,27334020-27334083,
           27334208-27334336,27334554-27334607,27334712-27334741
          Length = 153

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = -1

Query: 457 NRLKEEYQALIKYVQNNKSADNDWFRLESDKTGTRWFGKCWFVHNLLKYEFDLEFDIPIT 278
           NRL++E   L ++  ++  + N W    +   GT + G+           + L+ D P  
Sbjct: 18  NRLQKE---LAEWQMDSYDSPNRWVIEVTGAAGTLYAGET----------YQLQVDFPEH 64

Query: 277 YPKTAPEIALPGLDGKTAKMYRGGKICL 194
           YP  AP++           +Y  G ICL
Sbjct: 65  YPMEAPQVIFLNPAPMHPHIYSNGHICL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,168
Number of Sequences: 37544
Number of extensions: 404506
Number of successful extensions: 1076
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)