Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I04
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19154-5|CAA79557.1| 162|Caenorhabditis elegans Hypothetical pr... 238 3e-63
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.1
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 29 4.1
L16560-5|AAA27996.1| 443|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 27 9.4
U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set (trithorax/... 27 9.4
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 27 9.4
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 27 9.4
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 27 9.4
>Z19154-5|CAA79557.1| 162|Caenorhabditis elegans Hypothetical
protein C40H1.6 protein.
Length = 162
Score = 238 bits (582), Expect = 3e-63
Identities = 99/136 (72%), Positives = 119/136 (87%)
Frame = -1
Query: 541 VDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLESDKT 362
+D+ TK +L +IPL +TKA PRD +LW+ RLKEEY+A+I VQNNK D DWF+LES++
Sbjct: 1 MDDATKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLESNER 60
Query: 361 GTRWFGKCWFVHNLLKYEFDLEFDIPITYPKTAPEIALPGLDGKTAKMYRGGKICLTDHF 182
GT+WFGKCW+ HN++KYEFD+EFDIPITYP TAPEIALP LDGKTAKMYRGGKICL++HF
Sbjct: 61 GTKWFGKCWYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHF 120
Query: 181 KPLWARNVPRFGIAHA 134
KPLWARN P+FGIAHA
Sbjct: 121 KPLWARNTPKFGIAHA 136
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 8 NFIYNVQFVHFASSVFSLYVTTPFSIISG--ISTASQGTQPKSHGMGNPKPRHVPRPQRL 181
N++ V F S+FS + +PFS I G + QG P S+ + KP+ + + +R+
Sbjct: 467 NYLLKVNFTGKTISIFSSFRLSPFSDIVGKRFRFSPQGDGPASYTILTYKPKSMDKKRRM 526
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 8 NFIYNVQFVHFASSVFSLYVTTPFSIISG--ISTASQGTQPKSHGMGNPKPRHVPRPQRL 181
N++ V F S+FS + +PFS I G + QG P S+ + KP+ + + +R+
Sbjct: 512 NYLLKVNFTGKTISIFSSFRLSPFSDIVGKRFRFSPQGDGPASYTILTYKPKSMDKKRRM 571
>Z75952-4|CAB00094.2| 303|Caenorhabditis elegans Hypothetical
protein F29D10.3 protein.
Length = 303
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 466 LWVNRLKEEYQALIKYVQN--NKSADNDWFRLESDKTGTRWFGKCWFVHNLLKYEFDLE- 296
L +NRL Q+++ + +N N + F+L + + + W + F++NL F+ +
Sbjct: 101 LTINRLDSSSQSILAFKRNETNDTCPAKSFQLTFESSSSEWIDEKGFIYNLTFTSFNNQW 160
Query: 295 -FDIPIT 278
FD +T
Sbjct: 161 IFDYTVT 167
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 YNVQFVHFASSVFSLYVT-TPFSIISGISTASQGTQPKSHGMGNPKPRHVPRPQRL 181
Y +Q +AS+ + Y + TP S + T Q Q H P VP P RL
Sbjct: 249 YALQSAPYASAASAPYGSVTPAGAPSNVMTTQQYLQQIQHQQATGSPAPVPAPPRL 304
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 YNVQFVHFASSVFSLYVT-TPFSIISGISTASQGTQPKSHGMGNPKPRHVPRPQRL 181
Y +Q +AS+ + Y + TP S + T Q Q H P VP P RL
Sbjct: 249 YALQSAPYASAASAPYGSVTPAGAPSNVMTTQQYLQQIQHQQATGSPAPVPAPPRL 304
>L16560-5|AAA27996.1| 443|Caenorhabditis elegans Hypothetical
protein D2007.5 protein.
Length = 443
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 532 GTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQA 431
GTK+ SS L K+ P DKE + ++ E ++A
Sbjct: 310 GTKKNSSSTCLNSPKSTPEDKEPTIEKVAESFRA 343
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -1
Query: 550 LIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES 371
LI V EGT+ +PL++ K G D K+ + A++K++ N + + DWF
Sbjct: 113 LIFVAEGTESVHEDMPLIRLK-GVDDT---YPPQKKSF-AMVKWLAENMADEYDWFLRAD 167
Query: 370 D 368
D
Sbjct: 168 D 168
>U41508-1|AAG00027.3| 944|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 19
protein.
Length = 944
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 220 SSLSYRQD---RAGLFLVRSLDMLSVCQTQGQTHTSGGYEQTSICRTIWSRFCQ 372
SSL R D L VRS +SV Q+ G + + RT+ RFC+
Sbjct: 427 SSLRSRSDVRKSTRLVGVRSSSSISVATNHAQSQDPGFQPHSGVTRTLKGRFCR 480
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -1
Query: 550 LIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES 371
LI V EGT+ +PL++ K G D K+ + A++K++ N + + DWF
Sbjct: 113 LIFVAEGTESVHEDMPLIRLK-GVDDT---YPPQKKSF-AMVKWLAENMADEYDWFLRAD 167
Query: 370 D 368
D
Sbjct: 168 D 168
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -1
Query: 550 LIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES 371
LI V EGT+ +PL++ K G D K+ + A++K++ N + + DWF
Sbjct: 115 LIFVAEGTESVHEDMPLIRLK-GVDDT---YPPQKKSF-AMVKWLAENMADEYDWFLRAD 169
Query: 370 D 368
D
Sbjct: 170 D 170
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -1
Query: 550 LIMVDEGTKRTLSSIPLLQTKAGPRDKELWVNRLKEEYQALIKYVQNNKSADNDWFRLES 371
LI V EGT+ +PL++ K G D K+ + A++K++ N + + DWF
Sbjct: 105 LIFVAEGTESVHEDMPLIRLK-GVDDT---YPPQKKSF-AMVKWLAENMADEYDWFLRAD 159
Query: 370 D 368
D
Sbjct: 160 D 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,136
Number of Sequences: 27780
Number of extensions: 348551
Number of successful extensions: 952
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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