Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_I02
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   3.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.9  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   5.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.9  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   9.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.1  

>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/56 (23%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = -1

Query: 720 DYKYGESAVLNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 556
           + ++G +A++++ LIE +  + +++ +I + P+D +   Q+Q   +  + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -1

Query: 627 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 451
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 450 N---NDAQITRLLK 418
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
 Frame = +1

Query: 217 DSVKHN-NTINLKGIVKRFV-CIE-----NDWRSYINL**SRHCKSVSCSSFSAFLVDFN 375
           DS++H  +T N++  +KR + C E     ND  + IN   S    S+SC S    L++  
Sbjct: 538 DSMRHVLHTANVQ--IKRLILCFEDTQQSNDGTANIN---SIVNASLSCISSFRKLIEVT 592

Query: 376 ERFLNSLTYR 405
           ++FLN LT R
Sbjct: 593 KKFLNELTSR 602


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
 Frame = -1

Query: 759  DKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD- 583
            D   K+   +   + K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+ 
Sbjct: 836  DNVQKLMHKHVNQESKVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNY 894

Query: 582  -------------PKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 442
                          K+LE  +Q +++   +L++   K+  +  +++  S+    K+    
Sbjct: 895  DSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQ 954

Query: 441  AQITRLLKGESLSVSEAI 388
             +I+  LK E++S S+AI
Sbjct: 955  EEISN-LKEENMSQSQAI 971


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
 Frame = -1

Query: 711 YGESAVLNAQLIEIPYKGDQSSLIVVLPKDK-DGITQLQEALKDPKTLETAQQSMYSTEV 535
           Y ES +       + Y+G+ +++++  PKD  D  T  +E+ K+        + +   ++
Sbjct: 560 YLESQISTELFANLRYEGNDTTMMIAKPKDSWDFKTLFEESYKNQFGFSLIDRKIMVEDI 619

Query: 534 DL-YLPKFKIETETNLKDVLSNMNVNKIFNNDAQIT 430
            +  + +   ++E +        N N +F  D + T
Sbjct: 620 RIRAIARASNQSEVDTVFASETENENTVFIRDNKPT 655


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 581 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 480
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 474 NMNVNKIFNNDAQITRLLKGESLSVS 397
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,303
Number of Sequences: 5004
Number of extensions: 53255
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)