Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_I02
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 58 1e-08
11_01_0750 - 6315126-6315896,6316371-6316784 48 1e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 44 1e-04
01_01_1152 + 9170628-9171899 36 0.036
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 28 9.5
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 57.6 bits (133), Expect = 1e-08
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Frame = -1
Query: 690 NAQLIEIPYK--GD--QSSLIVVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLY 526
N +++++PY+ GD Q S+ ++LP+ +DG+ L E L +P+ LE + T
Sbjct: 296 NLKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFK 355
Query: 525 LPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXX 355
LPKFKI D+L ++ ++ F+++A +T ++ +G++L VS K
Sbjct: 356 LPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEG 415
Query: 354 XXXXXXXXFTMTRSSKVYVRPPIVFNANKPFYYALQVD--GVIMFNG 220
+T S F A+ PF + +Q D GV++F G
Sbjct: 416 TEAAAATAAVITLRSAPIAED---FVADHPFLFLIQEDMTGVVLFVG 459
Score = 43.2 bits (97), Expect = 2e-04
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Frame = -1
Query: 756 KTIKVPMMYKRGDYKYGESAVLNAQLIEIPYK--GD--QSSLIVVLPKDKDGITQLQEAL 589
++++ P M R K S+ + +++++PY GD Q S+ ++LP+ +DG+ L E L
Sbjct: 528 ESVQAPFMSTRK--KQYLSSYDSLKVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKL 585
Query: 588 -KDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLK- 418
+P+ +E M V + LPKFKI +L + + +F ++ + ++
Sbjct: 586 NSEPEFMEN-HIPMRPVHVGQFKLPKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDS 644
Query: 417 --GESLSVSEAIQKXXXXXXXXXXXXXXXXXFTMTRSSKVYVRP-PIVFNANKPFYYALQ 247
++L VS K +M S RP + F A+ PF + ++
Sbjct: 645 PGAQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHS-----RPRRLNFVADHPFMFLIR 699
Query: 246 VD--GVIMFNGIFIN 208
D GVI+F G +N
Sbjct: 700 EDVTGVILFIGHVVN 714
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Frame = -1
Query: 690 NAQLIEIPYKGDQS----SLIVVLPKDKDGITQL-QEALKDPKTLETAQQSMYSTEVDLY 526
N ++I++PYK ++ S+ + LP D DG+ +L Q+ +P LE + V +
Sbjct: 225 NFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTE-KCHVGIS 283
Query: 525 LPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLKGESLS 403
+P FKI + ++KD L +M + F +A+ + ++K + S
Sbjct: 284 VPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSS 324
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Frame = -1
Query: 684 QLIEIPY-KGD---QSSLIVVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLP 520
+++++PY KG Q S+ ++LP+ +DG+ L L +P+ LE + T LP
Sbjct: 90 KVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKLP 149
Query: 519 KFKIETETNLKDVLSNMNVNKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXXXX 349
KFKI D+L + + F++ A +T ++ + +L VS K
Sbjct: 150 KFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTE 209
Query: 348 XXXXXXFTMT-RSSKVYVRPPIVFNANKPFYYALQVD--GVIMFNGIFIN 208
++ RS+ V V F A+ PF + ++ D GV++F G +N
Sbjct: 210 AAAASAAVVSFRSAPVTVD----FVADHPFLFLIREDMTGVVLFIGHVVN 255
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.9 bits (79), Expect = 0.036
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Frame = -1
Query: 645 LIVVLPKDKDGITQLQE----ALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVL 478
++++LP D DG +L + A+ P+ ++ + + L +PKFK + K +
Sbjct: 271 MLLLLP-DGDGALKLADLYDMAVTTPEFIKKHTPAAEAPVRRLMVPKFKFSFKFEAKSDM 329
Query: 477 SNMNVNKIFNNDAQITRLLKGESLSVSEAIQKXXXXXXXXXXXXXXXXXFTMTRSSKVYV 298
+ V + F + G+ L ++E + M +
Sbjct: 330 RKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVAAASTAVVMMQKGSSL- 388
Query: 297 RPPIVFNANKPFYYAL--QVDGVIMFNGIFIN 208
PP+ F A++PF +A+ ++ G ++F G +N
Sbjct: 389 -PPVDFVADRPFLFAVVEELTGAVLFLGHVVN 419
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 579 KTLETAQQSMYSTEVDLYLP-KFKIETETNL 490
K +E A Q +YSTEV+L+ F +ET+T L
Sbjct: 809 KGMEEADQKIYSTEVNLHSQYYFYMETQTAL 839
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,424
Number of Sequences: 37544
Number of extensions: 301497
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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