Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H24
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0161 - 1086067-1086642                                           27   3.1  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    26   7.2  
04_04_0651 - 26952360-26952437,26952923-26952999,26954072-269543...    25   9.5  
01_03_0007 - 11578510-11578868,11579144-11579213                       25   9.5  

>05_01_0161 - 1086067-1086642
          Length = 191

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 306 IRPADDFQKLQNQNLSKFCRFLFDGRLCTVD 214
           +RP  DFQK     L+ F   +F+GRL + D
Sbjct: 104 LRPYRDFQKEWKLQLNDFTGAVFEGRLYSPD 134


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 200 SIYSPSTVHKRPSNKKRQ 253
           S+ SP T++K+P+N+ R+
Sbjct: 423 SVISPETLYKKPANRTRE 440


>04_04_0651 -
           26952360-26952437,26952923-26952999,26954072-26954300,
           26954926-26955537
          Length = 331

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 189 KYFNRFTVRLPCTSVRQIRND 251
           K F+  ++R P   +RQ+RND
Sbjct: 242 KLFDMASIRTPLVKLRQVRND 262


>01_03_0007 - 11578510-11578868,11579144-11579213
          Length = 142

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 305 FGRPMTSKSSKIRIYPSSVVS 243
           FG P+TS S+ + + PS +VS
Sbjct: 40  FGGPITSSSTTLSLMPSDLVS 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,005,791
Number of Sequences: 37544
Number of extensions: 104236
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)