Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H24
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical ...    26   6.4  
AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical ...    26   6.4  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    26   6.4  
U88311-9|AAB42349.3|  407|Caenorhabditis elegans Kinesin cargo a...    25   8.4  
DQ178243-1|ABA18182.1|  407|Caenorhabditis elegans kinesin 1 car...    25   8.4  

>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 180 EDDKYFNRFTVRLPCTSVRQIRNDRTWIN 266
           +D K      +RLPCT V ++RN    IN
Sbjct: 378 QDSKEVLILDLRLPCTPVARLRNHEATIN 406


>U61947-5|AAB03134.1|  723|Caenorhabditis elegans Hypothetical
           protein C06G3.4 protein.
          Length = 723

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 222 CTSVRQIRNDRTWIN 266
           CT+VR+I  D+ WIN
Sbjct: 383 CTAVREINFDQRWIN 397


>AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical
           protein C05D2.10b protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  VKGGRCVRGPNKRXHGALITC 21
           + G R  R PN+R H  ++TC
Sbjct: 435 LNGNRLPRMPNRRCHERMVTC 455


>AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical
           protein C05D2.10a protein.
          Length = 484

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  VKGGRCVRGPNKRXHGALITC 21
           + G R  R PN+R H  ++TC
Sbjct: 433 LNGNRLPRMPNRRCHERMVTC 453


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  VXPFI-WTSHASSSFYALXLRIRF-FRHLALISKQLKSRERYY*KCLMFEDDKYFN 200
           V PF+ W +    SF    + + + F HL  +S  + S  R     L   +DKY+N
Sbjct: 90  VIPFLKWLTEVFPSFLTWVVYLAYMFLHLQFVSAVVLSVHRITSVYLHMNNDKYWN 145


>U88311-9|AAB42349.3|  407|Caenorhabditis elegans Kinesin cargo
           adaptor protein 1 protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 165 KCLMFEDDKYFNRFTVRLPCTSVRQIRNDRTWINSDFGAFGSHR 296
           KC    D     +F  +    SV  ++ND  W + D  ++  HR
Sbjct: 86  KCFRNNDVDGMEKFVEKKTRESVSSMKNDEFWWDDDEISYWKHR 129


>DQ178243-1|ABA18182.1|  407|Caenorhabditis elegans kinesin 1 cargo
           adaptor alternativevariant a protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 165 KCLMFEDDKYFNRFTVRLPCTSVRQIRNDRTWINSDFGAFGSHR 296
           KC    D     +F  +    SV  ++ND  W + D  ++  HR
Sbjct: 86  KCFRNNDVDGMEKFVEKKTRESVSSMKNDEFWWDDDEISYWKHR 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,288,330
Number of Sequences: 27780
Number of extensions: 101765
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)