Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H24
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 86  SVKGGRCVRGPNKRXHGALITCSNMQLL 3
           +V+ G C  GP+ + +GA +  +  +LL
Sbjct: 381 TVEFGLCKEGPDVKAYGAGLLSAYGELL 408


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  RIRFFRHLALISKQLKSRERY 158
           R++    +  ISKQ+   +RY
Sbjct: 33  RVKLLLQVQHISKQISEEQRY 53


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  RIRFFRHLALISKQLKSRERY 158
           R++    +  ISKQ+   +RY
Sbjct: 33  RVKLLLQVQHISKQISEEQRY 53


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 293 MTSKSSKIRIYPSSVVSYLT 234
           + +K +  +IY SSV S LT
Sbjct: 521 LVNKRNNAKIYTSSVNSNLT 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,735
Number of Sequences: 438
Number of extensions: 1128
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)