Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H18
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   3.5  
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273...    28   6.1  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = -2

Query: 531  QQGAKPKSNKPVGTTIETTTNESQA*TS--RGRYVWHIIYVVHVDSSCVTLHLN 376
            Q+ A+ K+ K VG +  TT+ + +  +S  R   +    +++H+  SCV++HL+
Sbjct: 841  QKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRSTEFLLHIKLSCVSVHLS 894


>02_05_1265 -
           35326506-35326773,35326944-35327109,35327194-35327351,
           35327779-35327966,35328046-35328156,35328311-35328476,
           35328718-35328885,35329374-35330623
          Length = 824

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 573 NGQDGDASATTSNXQQGAKPKSNKPV--GTTIETTTNESQA*TSRGRYVW 430
           NGQD  AS T    + G    SN+ +  GT +  T   S      GRYVW
Sbjct: 40  NGQDSHASGTNPGFRVGEIRLSNRDIYFGTLLGNTPEGS------GRYVW 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,837
Number of Sequences: 37544
Number of extensions: 263553
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)