Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H15
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.35 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   10.0 

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 530 CFSDMNTLFIYSRFSALQ---LNVVCCYVFDC 444
           CFS+M+ LF  S +SAL    L V+  YV +C
Sbjct: 563 CFSEMSPLFACSTYSALAFILLQVISSYVTNC 594


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 533 HCFSDMNTLFIYSRFSALQLN 471
           HC    N L IY+R++ALQ N
Sbjct: 795 HCKLSENQLEIYNRYAALQKN 815


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 418  NVFNFIDPTIVLFFVFCSQSFL 353
            ++ NFI  T+ L   FCS +FL
Sbjct: 1199 HMLNFISSTLYLKVSFCSSNFL 1220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,237
Number of Sequences: 5004
Number of extensions: 33679
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)