Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H15
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm rece...    27   6.9  
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    27   9.1  

>AF038623-1|AAB94156.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 170 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -2

Query: 526 SVI*IRYLFIHDSLLFS*MLYVVMCLIVVLEFYANENVFNFIDPTIVLFFVFCSQSFLVW 347
           ++I + ++FI   +LF+  L+++ C  +         V+  +DP   LFFV   ++F+  
Sbjct: 259 TLIPVLFIFIPFGILFTCPLFLIDCEFLSAPITVIYAVYPALDPLPCLFFVDNYRNFIAG 318

Query: 346 YDDCRKK 326
                KK
Sbjct: 319 LFSKNKK 325


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
            C48B4.4c protein.
          Length = 1704

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -2

Query: 502  FIHDSLLFS*MLYVVMCLIVVLEFYANENVFNFIDPTIVLFFVF 371
            F   SL++  +LY ++CLI +  F A   +++ +   I+ +F++
Sbjct: 1167 FYSASLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1210


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
            C48B4.4b protein.
          Length = 1691

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -2

Query: 502  FIHDSLLFS*MLYVVMCLIVVLEFYANENVFNFIDPTIVLFFVF 371
            F   SL++  +LY ++CLI +  F A   +++ +   I+ +F++
Sbjct: 1154 FYSASLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1197


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
            C48B4.4a protein.
          Length = 1689

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -2

Query: 502  FIHDSLLFS*MLYVVMCLIVVLEFYANENVFNFIDPTIVLFFVF 371
            F   SL++  +LY ++CLI +  F A   +++ +   I+ +F++
Sbjct: 1152 FYSASLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1195


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
            cassette transporter protein.
          Length = 1704

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -2

Query: 502  FIHDSLLFS*MLYVVMCLIVVLEFYANENVFNFIDPTIVLFFVF 371
            F   SL++  +LY ++CLI +  F A   +++ +   I+ +F++
Sbjct: 1167 FYSASLIYDGILYSLICLIFLFMFLAFHWMYDHLAIVILFWFLY 1210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,992
Number of Sequences: 27780
Number of extensions: 186834
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)