Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H13
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   121   4e-28
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    31   0.90 
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    31   0.90 
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    31   0.90 
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    28   6.3  
AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical...    28   6.3  
AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  121 bits (292), Expect = 4e-28
 Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
 Frame = -2

Query: 588 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXL 412
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 411 WDYLYPFPQSRLVLIICVSSYFILMGILTLYXTFKEKGIFVVAKEKVGNNTRVWEASSYV 232
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 231 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVXNEITKLYH 73
           K HDDKY L    +   G + +  +TKS   +ID +G ++  +V  E+  LY+
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYN 173


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 346 HTDGYFDPLXYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 167
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 166 GIRD 155
           G  D
Sbjct: 120 GDDD 123


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 346 HTDGYFDPLXYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 167
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 166 GIRD 155
           G  D
Sbjct: 120 GDDD 123


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -1

Query: 346 HTDGYFDPLXYIQREGHLCGSQGEGWK*HQGLGSQFLCEETR**IQSRNCYARHEWQHSR 167
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 166 GIRD 155
           G  D
Sbjct: 120 GDDD 123


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 157 HGCLASVAIRVSHNNYEIVFIIVFLHIRTGFPDPGVISNLLLGYH 291
           HG  AS+ I     NY  +  I+  H  T   DP V+SNL  G H
Sbjct: 826 HGVYASILIE-DKTNYPTLVSIITTHGGTIVVDPKVLSNLNQGSH 869


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 180 HSCLA*QLRDCIYHRVSSHKNWLPRPW 260
           HS L  QL+  + +R  +HKNWL   W
Sbjct: 50  HSELGAQLQSALENRAKNHKNWLEDWW 76


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
           protein R06F6.8a protein.
          Length = 1468

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 4   NVRPAYITSXAHSFLFLLLGCXAVVQLGDLIXYNV--LNYSAVHVDEVGKRLGHG 162
           N++ A      H FL +L GC    + GD+  YN+  LN S V    V  ++ +G
Sbjct: 251 NMKDATCCDVNHKFLLILFGC----KNGDVCAYNIDELNGSLVQSFRVAPKVTNG 301


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
           protein R06F6.8b protein.
          Length = 1470

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 4   NVRPAYITSXAHSFLFLLLGCXAVVQLGDLIXYNV--LNYSAVHVDEVGKRLGHG 162
           N++ A      H FL +L GC    + GD+  YN+  LN S V    V  ++ +G
Sbjct: 251 NMKDATCCDVNHKFLLILFGC----KNGDVCAYNIDELNGSLVQSFRVAPKVTNG 301


>AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical
           protein C49A9.1 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 306 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 127
           E G F     K  +N + WE   Y  K +   N  +V+ + NGN  +  +T +  N+   
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337

Query: 126 NGT 118
           N T
Sbjct: 338 NNT 340


>AF047658-5|AAC04416.3|  434|Caenorhabditis elegans Hypothetical
           protein K03H6.5 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 50  SFFSXARLWYSLVISLXTMF*TTVPFTSMKLAN 148
           ++FS A +W+ L +SL  +     PF S+ + N
Sbjct: 122 NWFSAAAIWFVLAVSLERLLIIKFPFRSLDVHN 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,584
Number of Sequences: 27780
Number of extensions: 287181
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)