Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H10
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    93   8e-21
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    92   2e-20
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   0.99 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   1.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   1.7  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   2.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   3.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.0  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   4.0  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    24   5.3  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    24   5.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   5.3  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   5.3  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    24   7.0  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    24   7.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    23   9.2  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    23   9.2  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 93.5 bits (222), Expect = 8e-21
 Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
 Frame = -2

Query: 270 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 97
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 96  RCQE 85
            C++
Sbjct: 61  GCKK 64



 Score = 32.7 bits (71), Expect = 0.015
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 89  KRTVAGGAWVFSTTAASSCRSAVQEV 12
           K+ +AGGAW  +T AA+S RS ++ +
Sbjct: 63  KKVLAGGAWTVTTAAATSARSTIRRL 88


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 92.3 bits (219), Expect = 2e-20
 Identities = 40/70 (57%), Positives = 51/70 (72%)
 Frame = -2

Query: 270 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 91
           M KRTKKVG+TGKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C   
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCS-- 58

Query: 90  QEDCSRRSLG 61
            + CS+   G
Sbjct: 59  GKGCSKTLAG 68



 Score = 32.7 bits (71), Expect = 0.015
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 86  RTVAGGAWVFSTTAASSCRSAVQEV 12
           +T+AGGAW  +T AA+S RS ++ +
Sbjct: 64  KTLAGGAWTVTTAAATSARSTIRRL 88


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 128 FIASLPQNEQVYFACWVTS 184
           F+A + +NE  +FA W TS
Sbjct: 84  FVAHVSENENTFFAIWYTS 102


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 LFDHFT*RGTVTCAIFASNSNLFGT 261
           +FD FT    +T  I ASN N FG+
Sbjct: 550 VFDEFTNISNLTSPIEASNGNTFGS 574


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 222  VCHICQ*FQPFWYVWPF 272
            + ++ Q FQ  WY WPF
Sbjct: 1251 IVYLVQDFQRLWYHWPF 1267


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 111 IWSCKRCQEDCS 76
           IW+CK C++ CS
Sbjct: 65  IWTCKNCRKTCS 76


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 116 SASGLVSDVKRTVAGGAWVFSTTAASSCRSAVQEVT 9
           S+S   S    T +  + V STT  SS  SAV   T
Sbjct: 113 SSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTT 148


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 185 IFLTILRREAP*RVPYLPVIPTFLVRLAILVNL 283
           I L I   + P    Y+P++P  L RL  L N+
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERLKSLQNM 285


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 165 KYTCSFCGKDAMKRSCVGIWSCKRCQE 85
           KY C  CG     + C  I S  RC +
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMK 136


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 144 GKDAMKRSCVGIWSCKRCQEDCSRRSL 64
           GK  +    +G WSC   QE  S+  L
Sbjct: 277 GKTKLSNIVIGEWSCTLSQESWSQTKL 303


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 290 YRRGLPKWPNVPKRLELL 237
           YR+ LP  P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 328 NSAGRLLFSVNFCIGEVYQNGQTYQKGWNYW 236
           +S  R L+S    +G++Y + + Y K    W
Sbjct: 615 SSLNRKLYSDKIIVGQIYDHIKDYNKALAIW 645


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 125 RFIASLPQNEQVYFA 169
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 114 GIWSCKRCQE 85
           GIW CK C+E
Sbjct: 287 GIWYCKECEE 296


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 283 EVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLL 152
           EV ++GQ Y    + W +  T   ++T +      +P R VYL+
Sbjct: 178 EVIRDGQEYNVMADIWSLGITAYEIATGSPPHAKEDPFRAVYLI 221


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -2

Query: 123 SCVGIWSCKRCQEDCSR-RSLGILHYCCL 40
           S +G W  K C  D SR  S+ I    CL
Sbjct: 397 SSLGFWPSKYCVSDTSREESVNIFREECL 425


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 122 ERFIASLPQNEQVYFA 169
           ERF  ++PQ++QV FA
Sbjct: 273 ERFAVAVPQSKQVSFA 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,846
Number of Sequences: 5004
Number of extensions: 30008
Number of successful extensions: 92
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)