Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_H10
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 105 9e-24
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 104 2e-23
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 31 0.17
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 29 0.91
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 2.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 27 2.8
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 27 3.7
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 27 4.9
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776 27 4.9
01_05_0225 - 19501643-19501903,19503974-19504477 27 4.9
11_06_0391 - 23071997-23072278,23074390-23074476,23074623-23075003 26 6.4
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 6.4
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 26 6.4
05_03_0382 + 13342764-13342958,13343178-13343278,13343373-133434... 26 6.4
02_02_0222 - 8017291-8018454 26 6.4
02_01_0679 - 5048653-5051394 26 6.4
07_03_0377 + 17442942-17443529,17443616-17444158 26 8.5
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 26 8.5
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 105 bits (252), Expect = 9e-24
Identities = 44/61 (72%), Positives = 50/61 (81%)
Frame = -2
Query: 273 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 94
++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK
Sbjct: 25 ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84
Query: 93 C 91
C
Sbjct: 85 C 85
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 104 bits (249), Expect = 2e-23
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = -2
Query: 264 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 91
KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C
Sbjct: 33 KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 90
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 162 YTCSFCGKDAMKRSCVGIWSCK-RCQEDCSRRSLG 61
Y C+ C KD R + SC+ C ++C+ RS+G
Sbjct: 1321 YPCTSCKKDVSFRDIIKCSSCQGNCHKECTLRSVG 1355
>02_05_1346 -
35831261-35831371,35831609-35831779,35831850-35831888,
35831987-35832049,35832616-35832679,35832709-35832778,
35832866-35832934,35833101-35833186,35833670-35833800,
35834021-35834083,35834166-35834211,35834542-35834618,
35834690-35834724,35835480-35835542,35835632-35835719,
35836027-35836077,35836201-35836269
Length = 431
Score = 29.1 bits (62), Expect = 0.91
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 IHVTSCTADLHDEAA--VVENTQAPPATVLLTSLTRPDADTRTFHSIL 141
+H+ DL + +V N AP A V++ + RPD RT SIL
Sbjct: 80 VHLKILIQDLEKRSVQTLVNNNVAPVAAVVVMACNRPDYLQRTVESIL 127
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 183 EVTQHAKYTCSFCGKDAM 130
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 207 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCQEDCS 76
LR+ + K+E+ + S KD ++R + SC++ EDC+
Sbjct: 747 LREKLSKLEMEKKILDEQSLDQKDELQRLKSSLESCEKAMEDCN 790
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCL 40
C CG+ + + C+G C C S GIL CL
Sbjct: 188 CKRCGEGDLNQPCIGKTDCSSCHS-----SYGILCRACL 221
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Frame = -2
Query: 300 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 124
S + RF ++V K G Y L K AKYT G A R
Sbjct: 60 SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119
Query: 123 SCVGIWSCK 97
S G SCK
Sbjct: 120 SSAGAVSCK 128
>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
Length = 80
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -2
Query: 309 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 163
+ L ++ + + K + G+T + +RY LR+ ++K+EV K
Sbjct: 11 YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +1
Query: 70 PPATVLLTSLTRPDADTRTFHSILTTK*ASILCVLGYFHLFDHFT*RGTVTCAIFA 237
PP T+ P D S + G+FH+ H RGTV A+ A
Sbjct: 52 PPTPPRATAFAIPTVDLSLPRSATVPLVRAAATSCGFFHVTSHGVPRGTVASAVAA 107
>11_06_0391 - 23071997-23072278,23074390-23074476,23074623-23075003
Length = 249
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -2
Query: 321 PADCFSLSTFVSERFTKMAKRTKKVGITGKYGTRY-----GASLRKMVKKMEVTQ 172
P DC S V+ER TK+ K +++ +Y RY GA +K+ K E Q
Sbjct: 166 PKDCISNDPLVTERNTKLVKFYEEIA-QNRY-QRYHLIEAGAGKKKLTKSWENLQ 218
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 305 LCQLLYRRGLPKWP 264
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
>07_01_1149 + 10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 104 LVSDVKRTVAGGAWVFSTTAASSCRSAVQ 18
L SD + GG STT+ SSC + +Q
Sbjct: 1053 LQSDTLNLIQGGVTAGSTTSESSCAATLQ 1081
>05_03_0382 +
13342764-13342958,13343178-13343278,13343373-13343459,
13343559-13343709,13343826-13344116,13346058-13346197,
13346276-13346467,13346559-13346631,13346708-13346852,
13347017-13347124,13347213-13347306,13348245-13348324,
13348665-13348738,13349236-13349253
Length = 582
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 207 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCQEDCS 76
++K K+ + K + G++A K + G W+C +C++ C+
Sbjct: 80 IKKNNKQCTIQYCRKCLFNRYGQEAEKVANDGTWTCPKCKDICN 123
>02_02_0222 - 8017291-8018454
Length = 387
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 1 FIHVTSCTADLHDEAAVVENTQAPPATVL 87
FI V +LHD+AAV E P VL
Sbjct: 52 FISVVRSVVELHDDAAVGEYRDLPDPLVL 80
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -3
Query: 299 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 180
++L LP VPK LELLA++ + V L V+W + WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902
>07_03_0377 + 17442942-17443529,17443616-17444158
Length = 376
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 107 GLVSDVKRTVA-GGAWVFSTTAA 42
G V+DVK A G W FSTT A
Sbjct: 148 GAVTDVKMQGACGSCWAFSTTGA 170
>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 104 LVSDVKRTVAGGAWVFSTTAASSCRSAVQ 18
L SD + GG STT+ SSC + +Q
Sbjct: 1101 LQSDTLNLIQGGLTAGSTTSESSCAATLQ 1129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,917,731
Number of Sequences: 37544
Number of extensions: 198535
Number of successful extensions: 529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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