Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_H10
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 113 2e-26
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.038
U41559-8|AAM81108.1| 167|Caenorhabditis elegans Nuclear hormone... 31 0.20
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 31 0.20
Z81041-12|CAE17708.2| 81|Caenorhabditis elegans Hypothetical p... 31 0.26
Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical pr... 30 0.35
U42839-6|ABD63236.1| 88|Caenorhabditis elegans Hypothetical pr... 30 0.35
U42839-5|AAM54196.1| 133|Caenorhabditis elegans Hypothetical pr... 30 0.35
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 1.4
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 28 1.4
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 28 1.4
Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical pr... 28 1.9
AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistan... 28 1.9
AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistan... 28 1.9
Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 27 3.3
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 27 3.3
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 27 4.3
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 27 4.3
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 27 4.3
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 27 4.3
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 26 7.5
U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of ... 26 7.5
U39647-6|AAM51529.1| 505|Caenorhabditis elegans Twik family of ... 26 7.5
U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of ... 26 7.5
U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of ... 26 7.5
U39647-3|AAW30673.1| 512|Caenorhabditis elegans Twik family of ... 26 7.5
U39647-2|AAM51530.1| 498|Caenorhabditis elegans Twik family of ... 26 7.5
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 26 7.5
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein... 26 7.5
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 7.5
AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative pota... 26 7.5
AF083649-1|AAC32860.1| 381|Caenorhabditis elegans putative pota... 26 7.5
AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative pota... 26 7.5
AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative pota... 26 7.5
AF083644-1|AAC32855.1| 498|Caenorhabditis elegans putative pota... 26 7.5
AF083643-1|AAC32854.1| 512|Caenorhabditis elegans putative pota... 26 7.5
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 25 10.0
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 25 10.0
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 25 10.0
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 25 10.0
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 25 10.0
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 25 10.0
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 25 10.0
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 113 bits (273), Expect = 2e-26
Identities = 47/62 (75%), Positives = 54/62 (87%)
Frame = -2
Query: 270 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 91
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW+C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 90 QE 85
+
Sbjct: 61 HK 62
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 86 RTVAGGAWVFSTTAASSCRSAVQEV 12
+ VAGGA+V+ T A++ RS ++ +
Sbjct: 62 KVVAGGAYVYGTVTAATVRSTIRRL 86
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.038
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -1
Query: 313 LLFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 143
L +S C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 403 LSYSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>U41559-8|AAM81108.1| 167|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform b protein.
Length = 167
Score = 31.1 bits (67), Expect = 0.20
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Frame = -2
Query: 285 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 118
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 35 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 93
Query: 117 VGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAGGYVN 4
G+ +C C+ R G Y C C Y N
Sbjct: 94 YGVLACYGCKGFFRRTLTGKYRYACRFSNNCIVDKYFN 131
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 159 TCSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
TC CG++ KR C+ + C + + S+ C CC G
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCACTGNATDTSVCASSVCLFPRTSCCTG 1166
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -2
Query: 159 TCSFCGKDAMKRSCVGI-WSCKRCQEDCSRRSLGILHYCCLIMQICCAGGYV 7
TC CG R+C + C C D + C Q CCAG +V
Sbjct: 1217 TCGGCGTQTRSRTCASAPYGCP-CTGDLTETQSCAKQVCTTGAQ-CCAGKFV 1266
>Z81041-12|CAE17708.2| 81|Caenorhabditis elegans Hypothetical
protein C27A7.8 protein.
Length = 81
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = -2
Query: 159 TCSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
TC CG R+C G + C D S + + C CC G
Sbjct: 22 TCGNCGTQQRTRTCTGASTTCTCSGDSSAQQVCAPAICRFPRTACCTG 69
>Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical
protein C54G10.3 protein.
Length = 660
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 153 SFCGKDAMKRSCVGIWSCKRCQEDCSRRSL 64
S CGK ++ R G+W C + DC R L
Sbjct: 459 SGCGKSSLLRMFAGLWHCSSGKMDCHWRRL 488
>U42839-6|ABD63236.1| 88|Caenorhabditis elegans Hypothetical
protein F11C7.6b protein.
Length = 88
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKR--CQEDCSR-RSLGILHYCCLIMQI-CCAGGYV 7
C +CGK R+C + C C D +S G C + CC G Y+
Sbjct: 3 CGYCGKQNRTRTCEPVAGCAEPICSGDSIEIQSCGTSDNICFYPTVSCCNGAYI 56
>U42839-5|AAM54196.1| 133|Caenorhabditis elegans Hypothetical
protein F11C7.6a protein.
Length = 133
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKR--CQEDCSR-RSLGILHYCCLIMQI-CCAGGYV 7
C +CGK R+C + C C D +S G C + CC G Y+
Sbjct: 48 CGYCGKQNRTRTCEPVAGCAEPICSGDSIEIQSCGTSDNICFYPTVSCCNGAYI 101
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 174 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 91
++ KY C+ C R G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCC 43
C C + G SC++C + + S+G CC
Sbjct: 434 CDLCDSSCETCTAPGPMSCEKCSKGYGKGSIGYCRPCC 471
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCC 43
C C + G SC++C + + S+G CC
Sbjct: 806 CDLCDSSCETCTAPGPMSCEKCSKGYGKGSIGYCRPCC 843
>Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical
protein F55B12.5 protein.
Length = 551
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 323 GRPIAFLCQLLYRRGLPK--WPNVPKRLELLANMAHVTVPLY 204
G P+A + L+ +P+ WP V KRL N V +P++
Sbjct: 456 GGPLAAPIEKLFSFVVPRVLWPQVKKRLRFAMNRRGVKLPIF 497
>AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 464
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 323 GRPIAFLCQLLYRRGLPK--WPNVPKRLELLANMAHVTVPLY 204
G P+A + L+ +P+ WP V KRL N V +P++
Sbjct: 369 GGPLAAPIEKLFSFVVPRVLWPQVKKRLRFAMNRRGVKLPIF 410
>AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 573
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 323 GRPIAFLCQLLYRRGLPK--WPNVPKRLELLANMAHVTVPLY 204
G P+A + L+ +P+ WP V KRL N V +P++
Sbjct: 478 GGPLAAPIEKLFSFVVPRVLWPQVKKRLRFAMNRRGVKLPIF 519
>Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical
protein K06B4.1 protein.
Length = 371
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQIC 25
C C + A + G+ SC C+ R + LHYCC C
Sbjct: 5 CLICHRKAAGQH-YGVLSCFACKMFFHRMVVENLHYCCQKFNKC 47
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 322 AGRLLFSVNFCIGEVYQNGQTYQKGWNYWQIW 227
AG ++FC + ++NG++ G+N W+ W
Sbjct: 86 AGGTTMIIDFCCPD-HRNGESLIAGYNRWRSW 116
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 322 AGRLLFSVNFCIGEVYQNGQTYQKGWNYWQIW 227
AG ++FC + ++NG++ G+N W+ W
Sbjct: 86 AGGTTMIIDFCCPD-HRNGESLIAGYNRWRSW 116
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQIC 25
C CG D G+ SC+ C+ R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQIC 25
C CG D G+ SC+ C+ R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQIC 25
C CG D G+ SC+ C+ R + Y CL Q+C
Sbjct: 148 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 190
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -2
Query: 156 CSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQIC 25
C CG D G+ SC+ C+ R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 180 VTQHAKYTCSFCGKDAMKRSCVGIWSCKRCQEDCS 76
V Q+ + TC CG S G SC Q D S
Sbjct: 318 VNQNCQRTCGRCGSSTGNPSVPGGGSCTNYQADSS 352
>U39647-7|AAP31441.1| 544|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform e protein.
Length = 544
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>U39647-6|AAM51529.1| 505|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform a protein.
Length = 505
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 283 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 323
>U39647-5|AAM51531.1| 576|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform c protein.
Length = 576
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>U39647-4|AAM51532.1| 562|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform d protein.
Length = 562
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>U39647-3|AAW30673.1| 512|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform f protein.
Length = 512
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 276 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 316
>U39647-2|AAM51530.1| 498|Caenorhabditis elegans Twik family of
potassium channelsprotein 17, isoform b protein.
Length = 498
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 276 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 316
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -2
Query: 207 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQ 31
LR+ + ++ H Y C+ CG + + CK C+ ++ I + C L+ Q
Sbjct: 1109 LRERLFEVSDPYHV-YVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQ 1166
>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
protein.
Length = 1376
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 147 CGKDAMKRSCVGIWSCKRCQEDCSRRSL 64
C + M + G W C+RC+E+ S R +
Sbjct: 1114 CFRPRMTKVPEGDWFCQRCREEKSGRPM 1141
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 228 GTRYGASLRKMVKKMEVTQHAK 163
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
>AF083651-1|AAC32862.1| 562|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-1 protein.
Length = 562
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>AF083649-1|AAC32860.1| 381|Caenorhabditis elegans putative
potassium channel subunitn2P17m3 protein.
Length = 381
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 283 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 323
>AF083648-1|AAC32859.1| 544|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-3 protein.
Length = 544
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>AF083647-1|AAC32858.1| 576|Caenorhabditis elegans putative
potassium channel subunitn2P17m2-2 protein.
Length = 576
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 340 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 380
>AF083644-1|AAC32855.1| 498|Caenorhabditis elegans putative
potassium channel subunitn2P17m1-1 protein.
Length = 498
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 276 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 316
>AF083643-1|AAC32854.1| 512|Caenorhabditis elegans putative
potassium channel subunitn2P17m1-2 protein.
Length = 512
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 141 KDAMKRSCVGIWSCKRCQEDCSRRSLGILHYCCLIMQICCAG 16
K + KR+ + + C+++ R L I Y LI+ CC G
Sbjct: 276 KKSKKRNASSL-DDEECEDEEDRLQLPIASYFTLIIGYCCVG 316
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 114 GIWSCKRCQED 82
G WSCKRC+ D
Sbjct: 74 GRWSCKRCRSD 84
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 114 GIWSCKRCQED 82
G WSCKRC+ D
Sbjct: 74 GRWSCKRCRSD 84
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 147 CGKDAMKRSCVGIWSCKRCQEDCSRRSLGI 58
C + + C+G W+ K C CSR G+
Sbjct: 300 CDSSSGECKCIG-WTGKHCDIGCSRGRFGL 328
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 147 CGKDAMKRSCVGIWSCKRCQEDCSRRSLGI 58
C + + C+G W+ K C CSR G+
Sbjct: 300 CDSSSGECKCIG-WTGKHCDIGCSRGRFGL 328
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 147 CGKDAMKRSCVGIWSCKRCQEDCSRRSLGI 58
C + + C+G W+ K C CSR G+
Sbjct: 300 CDSSSGECKCIG-WTGKHCDIGCSRGRFGL 328
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 147 CGKDAMKRSCVGIWSCKRCQEDCSRRSLGI 58
C + + C+G W+ K C CSR G+
Sbjct: 300 CDSSSGECKCIG-WTGKHCDIGCSRGRFGL 328
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 114 GIWSCKRCQED 82
G WSCKRC+ D
Sbjct: 69 GRWSCKRCRSD 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,026
Number of Sequences: 27780
Number of extensions: 176063
Number of successful extensions: 539
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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