Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H09
         (666 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004991B3 Cluster: hypothetical protein 173.t00012;...    33   8.2  
UniRef50_A0CWG7 Cluster: Chromosome undetermined scaffold_3, who...    33   8.2  

>UniRef50_UPI00004991B3 Cluster: hypothetical protein 173.t00012;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 173.t00012 - Entamoeba histolytica HM-1:IMSS
          Length = 270

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 99  LNASFXXXXXXXXXXXXXFYCYYFYKLYISIASFLYMILSFQLLY 233
           LN SF               CYYFY + I I  F+ +I++F L +
Sbjct: 205 LNRSFNLSDVLLEHSQSIQKCYYFYVIIIEILCFIILIITFLLTF 249


>UniRef50_A0CWG7 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_3,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 277

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 162 YYFYKLYISIASFLYMILSFQLLYAVRQFIAYKEAKN 272
           Y F ++Y+++ S +  ++ F L + +R+ I YKE ++
Sbjct: 241 YVFSEIYLNLLSIIAFVIVFTLTWVIRKIIRYKEKQD 277


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,557,775
Number of Sequences: 1657284
Number of extensions: 10037131
Number of successful extensions: 22202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22191
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)