Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H09
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    28   1.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.4  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.8  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 5   FQF*AYCSLPLDPPGPAASFW 67
           ++F A+C +PL PPG + + W
Sbjct: 482 YKFFAFCGVPLFPPGISTNSW 502


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 FYCYYFYKLYISIASFLYMILSFQLLY 233
           F+C++FY    S  SFL+  L F   +
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFF 133


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 250 LPTKKRKIGHSPIKTITSTTRGVYLVVNTLPYPSFIGXK 366
           +P K R    SP++T TS+++   +V ++ P P  I  K
Sbjct: 226 VPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTK 264


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 649 CLYNLQILK*FCLATFLFSNVC 584
           C Y L IL   CLA+FL+ + C
Sbjct: 56  CNYALSILHNICLASFLYLSKC 77


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 253 PTKKRKIGHSPIKTITSTTRGVYLVVN 333
           PT  R I HS + T  S T GV   VN
Sbjct: 261 PTNSRSISHSSLYTKQSGTAGVLPAVN 287


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 26  SLPLDPPGPAASFWLPTRRPHF 91
           S P+   GP+ +F LPT  P+F
Sbjct: 261 SAPMLKAGPSIAFKLPTMEPNF 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,927
Number of Sequences: 5004
Number of extensions: 45720
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)