Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H06
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0282 - 16236659-16236728,16236822-16236889,16238212-162382...    47   1e-05
03_05_0166 - 21438681-21438750,21438832-21438899,21440260-214403...    47   1e-05
07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187           29   3.1  
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279           29   4.1  

>07_03_0282 -
           16236659-16236728,16236822-16236889,16238212-16238263,
           16238357-16238526,16238611-16238644,16239197-16239206,
           16239644-16239749
          Length = 169

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IP  IRRYLPD SYEDW +DELI+ D
Sbjct: 135 IPFTIRRYLPDGSYEDWGVDELIVED 160


>03_05_0166 -
           21438681-21438750,21438832-21438899,21440260-21440311,
           21440405-21440574,21440652-21440685,21441991-21442025
          Length = 142

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IP  IRRYLPD SYEDW +DELI+ D
Sbjct: 108 IPFTIRRYLPDGSYEDWGVDELIVED 133


>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
          Length = 337

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = -3

Query: 283 LMREDLLGASSVGPIVVRDHARLGGNMSSSGLIDTDLHILQFMKYCNMIRKRELW 119
           L+RE ++ A+S   IVV D  +L   +  SGL    + ++QF    N +R ++L+
Sbjct: 150 LLREKMVEAASDKFIVVVDETKLVTGLGGSGLA-MPVEVVQFCWKYNQVRLQDLF 203


>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -3

Query: 343 DLS*SKFESNLSIIL-----IGYIDLMREDLLGASSVGPIVVRDHARLGG-NMSSSGLID 182
           DLS +KF+ NLS+I      + Y+DL + +L G     P V     RL   N+S + L D
Sbjct: 391 DLSNNKFKGNLSVIAKWSNDLEYVDLSQNNLTGTI---PDVSSQFLRLNYLNLSHNSLAD 447

Query: 181 T 179
           T
Sbjct: 448 T 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,293,156
Number of Sequences: 37544
Number of extensions: 195744
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)