Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H06
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27113-1|CAA81629.1|  127|Homo sapiens RNA Polymerase II subunit...    52   2e-06
CR457021-1|CAG33302.1|  127|Homo sapiens POLR2F protein.               52   2e-06
CR456546-1|CAG30432.1|  127|Homo sapiens POLR2F protein.               52   2e-06
BC003582-1|AAH03582.1|  127|Homo sapiens polymerase (RNA) II (DN...    52   2e-06
AL031587-2|CAB62981.1|  127|Homo sapiens polymerase (RNA) II (DN...    52   2e-06

>Z27113-1|CAA81629.1|  127|Homo sapiens RNA Polymerase II subunit
           14.4 kD protein.
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IPIIIRRYLPD SYEDW +DELII D
Sbjct: 102 IPIIIRRYLPDGSYEDWGVDELIITD 127


>CR457021-1|CAG33302.1|  127|Homo sapiens POLR2F protein.
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IPIIIRRYLPD SYEDW +DELII D
Sbjct: 102 IPIIIRRYLPDGSYEDWGVDELIITD 127


>CR456546-1|CAG30432.1|  127|Homo sapiens POLR2F protein.
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IPIIIRRYLPD SYEDW +DELII D
Sbjct: 102 IPIIIRRYLPDGSYEDWGVDELIITD 127


>BC003582-1|AAH03582.1|  127|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide F protein.
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IPIIIRRYLPD SYEDW +DELII D
Sbjct: 102 IPIIIRRYLPDGSYEDWGVDELIITD 127


>AL031587-2|CAB62981.1|  127|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide F protein.
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -3

Query: 619 IPIIIRRYLPDHSYEDWSIDELIIID 542
           IPIIIRRYLPD SYEDW +DELII D
Sbjct: 102 IPIIIRRYLPDGSYEDWGVDELIITD 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,464,638
Number of Sequences: 237096
Number of extensions: 1151591
Number of successful extensions: 2060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)