Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H06
         (633 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase...    59   4e-09
BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p pro...    59   4e-09
AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA ...    59   4e-09
AY113420-1|AAM29425.1|  341|Drosophila melanogaster RE18781p pro...    28   9.1  
AF509933-1|AAM43929.1|  992|Drosophila melanogaster transmembran...    28   9.1  
AE014297-2421|AAO41574.1|  986|Drosophila melanogaster CG31247-P...    28   9.1  
AE014297-2420|AAF55477.3|  992|Drosophila melanogaster CG31247-P...    28   9.1  
AE014297-2419|AAO41573.1| 1513|Drosophila melanogaster CG31247-P...    28   9.1  
AE014297-2418|AAO41572.1| 1513|Drosophila melanogaster CG31247-P...    28   9.1  

>Z47726-1|CAA87655.1|  131|Drosophila melanogaster RNA polymerase
           subunit protein.
          Length = 131

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = -3

Query: 631 KHGXIPIIIRRYLPDHSYEDWSIDELIIID 542
           K   IPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 101 KQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>BT001786-1|AAN71541.1|  131|Drosophila melanogaster RH21608p
           protein.
          Length = 131

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = -3

Query: 631 KHGXIPIIIRRYLPDHSYEDWSIDELIIID 542
           K   IPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 101 KQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>AE014297-233|AAF52039.1|  131|Drosophila melanogaster CG1163-PA
           protein.
          Length = 131

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = -3

Query: 631 KHGXIPIIIRRYLPDHSYEDWSIDELIIID 542
           K   IPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 101 KQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130


>AY113420-1|AAM29425.1|  341|Drosophila melanogaster RE18781p
           protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 222 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 251


>AF509933-1|AAM43929.1|  992|Drosophila melanogaster transmembrane
           protein TINCAR protein.
          Length = 992

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 867 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 896


>AE014297-2421|AAO41574.1|  986|Drosophila melanogaster CG31247-PC,
           isoform C protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 867 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 896


>AE014297-2420|AAF55477.3|  992|Drosophila melanogaster CG31247-PB,
           isoform B protein.
          Length = 992

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 867 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 896


>AE014297-2419|AAO41573.1| 1513|Drosophila melanogaster CG31247-PD,
           isoform D protein.
          Length = 1513

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 867 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 896


>AE014297-2418|AAO41572.1| 1513|Drosophila melanogaster CG31247-PA,
           isoform A protein.
          Length = 1513

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 268 LLGASSVGPIVVRDHARLGGNMSSSGLIDT 179
           LLG SS  P+++    R G N SSSG   T
Sbjct: 867 LLGKSSAQPLLMSSGQRTGSNSSSSGCNST 896


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,470,403
Number of Sequences: 53049
Number of extensions: 360670
Number of successful extensions: 773
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)