Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H06
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical pr...    46   3e-05
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical
           protein C06A1.5 protein.
          Length = 137

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -3

Query: 631 KHGXIPIIIRRYLPDHSYEDWSIDELIIID 542
           K   IPII+RRYLPD SYEDW  D+L + D
Sbjct: 107 KQRRIPIIVRRYLPDGSYEDWPTDQLQLAD 136


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 134 SNHITILHKLQNVQISIYQ--PTAGHVSPKPRMISHNDRSYT 253
           S+ + IL +LQN++I      PT    S  PR IS +  SYT
Sbjct: 61  SSTVEILRRLQNLEIQDQSRSPTCSGYSSLPRRISGSKSSYT 102


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 275 RGFAGCKQCRTDRC 234
           RG   CK+CRTDRC
Sbjct: 70  RGRWNCKKCRTDRC 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,518
Number of Sequences: 27780
Number of extensions: 199345
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)