Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H05
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm rece...    28   2.9  
AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin (cae...    28   2.9  
Z68106-7|CAA92131.1|   72|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen prot...    27   8.9  
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    27   8.9  

>AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 240 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 321 LFSNISYAKIACFF---FNSRYY*ITLHDRPCQLLNALVIDNVVP 196
           +F  +SY  +A F     NS+ Y    H    QLLNALV+  ++P
Sbjct: 221 IFGTLSYRAVASFAKNTSNSKQY----HSMQLQLLNALVLQALIP 261


>AF039046-8|AAB94212.1|   72|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 2 protein.
          Length = 72

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -2

Query: 447 TAPYGIAAPYGIAAPYTAY----GAYGVAPYGLG 358
           TA YG     G+   Y  Y    G YG+ PYG+G
Sbjct: 17  TAQYGYGGYPGMMGGYGGYPGMMGGYGMRPYGMG 50


>Z68106-7|CAA92131.1|   72|Caenorhabditis elegans Hypothetical
           protein F41E7.8 protein.
          Length = 72

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 429 AAPYGIAAPYTAYGAYGVAPYGLGVHAW 346
           +A +G   PY  YG YG    G G   W
Sbjct: 18  SAQWGYGRPYGGYGGYGGGYGGYGPRPW 45


>AF039720-3|AAB96697.1|  281|Caenorhabditis elegans Collagen protein
           54 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 367 VGGDAVSAISGVGRGDSVRCGDAIGGSIGRPNS 465
           VGGD    I G    D     D + GS G P +
Sbjct: 226 VGGDGTEGIQGAPGKDGENGSDGVAGSDGAPGA 258


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 235 TRPIVQRYSIISAIKKKACYFCIADIRK 318
           T P  Q Y +   IK+K CY C  D+ K
Sbjct: 221 TIPAEQSYEVAKMIKEKFCYVC-PDVMK 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,490
Number of Sequences: 27780
Number of extensions: 191135
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)