Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H04
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1270 + 35886571-35886573,35886676-35886708,35887073-358872...    30   1.3  
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    27   9.2  

>01_06_1270 +
           35886571-35886573,35886676-35886708,35887073-35887235,
           35887307-35887437,35887593-35887730,35887814-35887912,
           35888103-35888339
          Length = 267

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 517 CQPEELKRGVICMPLQYIYRKRTALMTCHVHLCPSLFIIDMIYLITI 377
           C+  E+++ V   P  YIYR +  L TCH  L  SL I   ++ +T+
Sbjct: 148 CKDPEMRKQVRSNP--YIYRGKLPLKTCHELLMVSLDIEKNLHEVTL 192


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 482 AYYSSFQLLWLALALVNFSISSSVLFALDEISSIDLLADVV 604
           A++ + + LW+    +  ++SSS++FA  E S   LL  ++
Sbjct: 53  AHHGNIERLWIEAPALTHALSSSLIFARIEDSEYALLRKIL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,120
Number of Sequences: 37544
Number of extensions: 248116
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)