Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_H04
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical...    27   8.3  

>Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical
           protein F15G9.5 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 147 ELDNYCVLCCGNI*HK 100
           E DNYC LCCGN  H+
Sbjct: 73  EEDNYCYLCCGNSEHQ 88


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +2

Query: 518 LALVNFSISSSVLFALDEISSIDLLADVVMSSI 616
           + +V ++  ++V+  L++I+SID LAD+V  ++
Sbjct: 92  IGIVTYNRDATVVADLNKITSIDQLADIVFGAL 124


>AL132949-18|CAB70109.2|  725|Caenorhabditis elegans Hypothetical
           protein Y53F4B.20 protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
 Frame = +2

Query: 347 IKDTKLCYYIYCY*INHVNDE*TRTQMNMAGH*CSPFSIYVLQ-RHAYYSSFQLLWLALA 523
           I  + LC+ +  +   H+  E T T +N++ H  + F +   Q +H  +++ Q+L L   
Sbjct: 230 ITPSMLCFLLLPHEYTHI--ESTYTGVNISVH-YNRFRVQKEQTKHLLHTATQVLALLKD 286

Query: 524 LVN--FSISSSVLFALDEISSIDLLADVVMSSIDFF 625
           + +    +    +  ++E+SS      +V+S + FF
Sbjct: 287 IFSSLIPVPKIDIITMNEVSSTACFGSIVVSEVQFF 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,206
Number of Sequences: 27780
Number of extensions: 251620
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)